You are here

Home

ASPNIDRAFT_122186-T1, ASPNIDRAFT_122186-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_122186-T1
Unique NameASPNIDRAFT_122186-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000016.1:518973..520599-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_122186-T1 ID=ASPNIDRAFT_122186-T1|Name=ASPNIDRAFT_122186-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1627bp|location=Sequence derived from alignment at ACJE01000016.1:518973..520599- (Aspergillus niger ATCC 1015)
ATGTCGTCCTCACAATCGCCGCAGAACAGCAATGCGGACCCCAGTTCCTC
AGCGAAGCCATTCTCTTTATCATTAGGCGGAAACTCCACGAAAGCACCAG
CAAACGGCCAGCCGAAGAAAACATCCTTCAACATTCAAGGCGCGGCGCGT
TCCACCGACTCACCCAGCCGAACACTCGCGCGCCGACCTCACCACCTGCA
CGATGACGAAGAATCCGATGAAGAAGCCGCGCCCACTCATGAAGCCGTCA
CCGGGTTCGACACCTTAACGGGAACGGCTATTCCCGCCAACAAGGTGGAA
GAAAAGCGCGAGCTGGTCATTCCCGTCGCTGGAAATAATAATTGGAGGGA
CCGTCCGGGCGTCAATCTCCGGAAACCTAAGGGCAAGAACCTCTTGCCAA
AGGAGGTCCAGGCCATTCAGGAAGCTCAGAAACGGGGTGAAGTTGCTGGA
GATAATGTTGAGACAGAGCGTCCGAGTATGGCTTATGGGTTGAGTTTTGC
GCAGCCGGCTTCGCAGGATTCGGCCCAGGCGGCGGATAATGATCGCCCGA
TGAAGGATGTTACTGAGCCTGCTGCTACTCCTGCTGCCGAGGTAGAACGC
AAGCCACTCACGCAGGATGAGATTGCCTTGCAGGCGCTTATTCGAGAGAC
GAAGGGGGAGCCGGAGCGCAGGTCGGATCTTGTTATTGAGTCGGTTAATC
GAGATGACGATGATCGGGCGGGCGGGCGATATGATGAGACGTCTTCGTTT
CGAGCGGATGTTGCGGCGCGCCCGGAGTCTGCGAGCTTGGATCAGTATAA
CGCAATCCCTGTTGAGGAGTTTGGCGCTGCGCTACTTCGTGGTATGGGGT
GGAAGGAGGGTCAAGCTGTAGGAAGAGGAAAATACGGTGGTTCTGCAAAT
CAGGACAATAAGCCGCGGGTCCCGGAGCGTCGTCCTGGGTTCCTGGGGAT
CGGAGCGAAAGATGTGTCTGGGGGGAAGGGTGCAGAGGCCGAACTCGGTG
CATGGGGCAAGGCTGCCATGCGGAAAGGGTCCAGGAAGGGAGGGAAGGAG
GGCGAGTCCAATCCGGAAGGTGTATATATGCCCATCATGATGCGAAACAA
GCAGACCGGCGAGTTCATAACAGAAGAGGAGCTCGCGGCGCAACGGAAAG
AGGCCAAGAAACGGGGCGACGATGACGAATGGAAGCAACGACGAGATCGC
AATTTGGAGAAGAGTGGCCGTGATAGGGATCGTGATCGTGACTCACGGCG
TCGCGACTACGATGACGATGAAACTGATCGCTATGACAGACGGAGGACCG
GATCTTCAAGGAGAGACCGGAGTTTGTCATCCAGTGACCGGCATTCAAGA
CGGCGCAGATACGAAGATGAAGATAGCGACAGTCGTGATGACCGCTACTA
CCGGGACAGAGACCGTGACCGGGATCGTGACTATCGCCGGGATCGTGATC
GAAATGGAGATCGGGAACGAGAGCGTGACAGGGACAGAGATCGGGATCGG
GACCGCAGCAGACGGTATCGTGATGATGATCGCCATAGTAGCTCAAGGCA
TTCTTCGTCGCATACATCGAGTAGATATCGTGATCGGGATAGGGAGCGAG
ACAGTGATCGCGACTCCCGCCGGAGAA
back to top

Coding sequence (CDS) from alignment at ACJE01000016.1:518973..520599-

>ASPNIDRAFT_122186-T1 ID=ASPNIDRAFT_122186-T1|Name=ASPNIDRAFT_122186-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1625bp|location=Sequence derived from alignment at ACJE01000016.1:518973..520599- (Aspergillus niger ATCC 1015)
ATGTCGTCCTCACAATCGCCGCAGAACAGCAATGCGGACCCCAGTTCCTC
AGCGAAGCCATTCTCTTTATCATTAGGCGGAAACTCCACGAAAGCACCAG
CAAACGGCCAGCCGAAGAAAACATCCTTCAACATTCAAGGCGCGGCGCGT
TCCACCGACTCACCCAGCCGAACACTCGCGCGCCGACCTCACCACCTGCA
CGATGACGAAGAATCCGATGAAGAAGCCGCGCCCACTCATGAAGCCGTCA
CCGGGTTCGACACCTTAACGGGAACGGCTATTCCCGCCAACAAGGTGGAA
GAAAAGCGCGAGCTGGTCATTCCCGTCGCTGGAAATAATAATTGGAGGGA
CCGTCCGGGCGTCAATCTCCGGAAACCTAAGGGCAAGAACCTCTTGCCAA
AGGAGGTCCAGGCCATTCAGGAAGCTCAGAAACGGGGTGAAGTTGCTGGA
GATAATGTTGAGACAGAGCGTCCGAGTATGGCTTATGGGTTGAGTTTTGC
GCAGCCGGCTTCGCAGGATTCGGCCCAGGCGGCGGATAATGATCGCCCGA
TGAAGGATGTTACTGAGCCTGCTGCTACTCCTGCTGCCGAGGTAGAACGC
AAGCCACTCACGCAGGATGAGATTGCCTTGCAGGCGCTTATTCGAGAGAC
GAAGGGGGAGCCGGAGCGCAGGTCGGATCTTGTTATTGAGTCGGTTAATC
GAGATGACGATGATCGGGCGGGCGGGCGATATGATGAGACGTCTTCGTTT
CGAGCGGATGTTGCGGCGCGCCCGGAGTCTGCGAGCTTGGATCAGTATAA
CGCAATCCCTGTTGAGGAGTTTGGCGCTGCGCTACTTCGTGGTATGGGGT
GGAAGGAGGGTCAAGCTGTAGGAAGAGGAAAATACGGTGGTTCTGCAAAT
CAGGACAATAAGCCGCGGGTCCCGGAGCGTCGTCCTGGGTTCCTGGGGAT
CGGAGCGAAAGATGTGTCTGGGGGGAAGGGTGCAGAGGCCGAACTCGGTG
CATGGGGCAAGGCTGCCATGCGGAAAGGGTCCAGGAAGGGAGGGAAGGAG
GGCGAGTCCAATCCGGAAGGTGTATATATGCCCATCATGATGCGAAACAA
GCAGACCGGCGAGTTCATAACAGAAGAGGAGCTCGCGGCGCAACGGAAAG
AGGCCAAGAAACGGGGCGACGATGACGAATGGAAGCAACGACGAGATCGC
AATTTGGAGAAGAGTGGCCGTGATAGGGATCGTGATCGTGACTCACGGCG
TCGCGACTACGATGACGATGAAACTGATCGCTATGACAGACGGAGGACCG
GATCTTCAAGGAGAGACCGGAGTTTGTCATCCAGTGACCGGCATTCAAGA
CGGCGCAGATACGAAGATGAAGATAGCGACAGTCGTGATGACCGCTACTA
CCGGGACAGAGACCGTGACCGGGATCGTGACTATCGCCGGGATCGTGATC
GAAATGGAGATCGGGAACGAGAGCGTGACAGGGACAGAGATCGGGATCGG
GACCGCAGCAGACGGTATCGTGATGATGATCGCCATAGTAGCTCAAGGCA
TTCTTCGTCGCATACATCGAGTAGATATCGTGATCGGGATAGGGAGCGAG
ACAGTGATCGCGACTCCCGCCGGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPP2ASPNIDRAFT_122186Aspergillus niger ATCC 1015gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_122186-T1.cdsASPNIDRAFT_122186-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_122186-T1.utr3p1ASPNIDRAFT_122186-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_122186-T1.exon1ASPNIDRAFT_122186-T1.exon1Aspergillus niger ATCC 1015exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_122186-T1ASPNIDRAFT_122186-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
DBxrefInterPro:IPR000467
DBxrefInterPro:IPR026822
DBxrefPFAM:PF12656
ProductPre-mRNA-splicing factor spp2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000016.1supercontigACJE01000016.1:518973..520599 -
Powered by Drupal