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ASPNIDRAFT_124001-T1, ASPNIDRAFT_124001-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_124001-T1
Unique NameASPNIDRAFT_124001-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000017.1:167451..168606-

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_124001-T1 ID=ASPNIDRAFT_124001-T1|Name=ASPNIDRAFT_124001-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1156bp|location=Sequence derived from alignment at ACJE01000017.1:167451..168606- (Aspergillus niger ATCC 1015)
ATGGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCC
ACTGTCACTCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGTCTGTA
AGGACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGC
TCACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTG
CCGCAGCTCGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGTTCAGG
AACTGGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCG
AGGAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGA
ACCCGCACCGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGCTGCGG
AGGGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGAT
CCTGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCC
AGGTGTGTATGCTCATCGGCAAAGTTGCGCCGCATGCTAATCGCCACTGA
AGACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGAAGAATG
AAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCGCCGCCC
AAACAAATGAATTTTGGGTAAGATATGTCTTTTGGAGCGTGTCTACATGT
GTGCTTCTAACTCGGAATTATAGATCGTTACAACCCATGCCACAACCGTC
GCAGAGAGCAAAAGACGCCCTGAATAAAACACCAGAACGACTGCCCATTA
TAAACTATTCTCTATTGAAAGATAATGTGCTCCGAAAGAAGTTAAAAGAT
TTGGGTATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGTCACAC
AGAGTGGATGAATTTGTGGAATGCCAACTGCGACTCCAAAACGCCAAAGT
CCAAAAGGGAATTGCTGAGAGAACTGGATATCTGGGAACGCACGCAAGGC
GGCCAAGCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGCAAAGA
CTTTGATGCGGCGGCGTGGTCAACGAGTCATGACGATGACTTCAAGCGGC
TCATTGCCAATGCGCGAAAAAAGAGCGAAGCGCAGGTGCGCACCACGATA
CCACAA
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Coding sequence (CDS) from alignment at ACJE01000017.1:167451..168606-

>ASPNIDRAFT_124001-T1 ID=ASPNIDRAFT_124001-T1|Name=ASPNIDRAFT_124001-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=3144bp|location=Sequence derived from alignment at ACJE01000017.1:167451..168606- (Aspergillus niger ATCC 1015)
TATAGATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGC
CCTGAATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGA
AAGATAATGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACG
GGCCCGAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTG
GAATGCCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGA
GAGAACTGGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCA
GGGGACGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTG
GTCAACGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAA
AAAAGAGCGAAGCGCAGGTGCGCACCACGATACCACACGACGGACTGGTC
GCGTGCCCAATCTGCAACCGGAGGATGAAGAATGAAGCGGTGTTTCGACA
CTTGGATACATGCACTGGAGAGCCCGCGCCGCCCAAACAAATGAATATGG
ACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCCACTG
TCACTCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGTCTGTAAGGA
CTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGCTCAC
TTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTGCCGC
AGCTCGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGTTCAGGAACT
GGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCGAGGA
AGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGAACCC
GCACCGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGCTGCGGAGGG
CGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGATCCTG
TTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCCAGTA
TAGATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCC
TGAATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAA
GATAATGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACGGG
CCCGAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGA
ATGCCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGA
GAACTGGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCAGG
GGACGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGT
CAACGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAA
AAGAGCGAAGCGCAGGTGCGCACCACGATACCACACGACGGACTGGTCGC
GTGCCCAATCTGCAACCGGAGGATGAAGAATGAAGCGGTGTTTCGACACT
TGGATACATGCACTGGAGAGCCCGCGCCGCCCAAACAAATGAATATGGAC
CAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCCACTGTC
ACTCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGTCTGTAAGGACT
TCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGCTCACTT
TGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTGCCGCAG
CTCGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGTTCAGGAACTGG
TTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCGAGGAAG
GCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGAACCCGC
ACCGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGCTGCGGAGGGCG
TCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGATCCTGTT
GCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCCAGTATA
GATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCCTG
AATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGA
TAATGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACGGGCC
CGAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGAAT
GCCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGA
ACTGGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCAGGGG
ACGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGTCA
ACGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAA
GAGCGAAGCGCAGGTGCGCACCACGATACCACACGACGGACTGGTCGCGT
GCCCAATCTGCAACCGGAGGATGAAGAATGAAGCGGTGTTTCGACACTTG
GATACATGCACTGGAGAGCCCGCGCCGCCCAAACAAATGAATATGGACCA
GACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCCACTGTCAC
TCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGTCTGTAAGGACTTC
TTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGCTCACTTTG
CATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTGCCGCAGCT
CGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGTTCAGGAACTGGTT
GAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCGAGGAAGGC
TGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGAACCCGCAC
CGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGCTGCGGAGGGCGTC
AGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGATCCTGTTGC
GATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006513protein monoubiquitination
GO:0006301postreplication repair
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0061630ubiquitin protein ligase activity
GO:0003697single-stranded DNA binding
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RAD18ASPNIDRAFT_124001Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_124001-T1ASPNIDRAFT_124001-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_124001-T1.cdsASPNIDRAFT_124001-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_124001-T1.utr3p1ASPNIDRAFT_124001-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_124001-T1.exon3ASPNIDRAFT_124001-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_124001-T1.exon2ASPNIDRAFT_124001-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_124001-T1.exon1ASPNIDRAFT_124001-T1.exon1Aspergillus niger ATCC 1015exon


Properties
Property NameValue
DBxrefInterPro:IPR017907
DBxrefInterPro:IPR004580
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR006642
DBxrefInterPro:IPR003034
DBxrefInterPro:IPR001841
DBxrefPFAM:PF13445
DBxrefPFAM:PF14634
DBxrefPFAM:PF13920
DBxrefPFAM:PF13923
DBxrefPFAM:PF00097
DBxrefPFAM:PF02037
ProductE3 ubiquitin-protein ligase rad18
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000017.1supercontigACJE01000017.1:167451..168606 -
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