You are here

Home

ASPNIDRAFT_137492-T1, ASPNIDRAFT_137492-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_137492-T1
Unique NameASPNIDRAFT_137492-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000020.1:1017034..1017588-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_137492-T1 ID=ASPNIDRAFT_137492-T1|Name=ASPNIDRAFT_137492-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=555bp|location=Sequence derived from alignment at ACJE01000020.1:1017034..1017588- (Aspergillus niger ATCC 1015)
TCCGCCCTCACAACCCTCCTCTCCACCACAACCACAACACCACCCACCCC
CCTCTCCGCAAACACAATCCAAATCCTCCACAACCTCCAACACCAACACC
TCTGGACCTCCCTGCGCGTCCACGACCTCCACCTCCCCAGCAAATCCACC
ACCGAACCTGAACAACCCCTCTACCTCATCTCCGGCATCCCCCCGCACCA
CCTCTACATCCACCCGGACGAGCAGCTGTTTATGCTGGAGCGCGGACTGC
GCGAAGACGACGTCGAGCTCGAGCGCATGTTCGTCCTGCCCACGGTGCAG
GGCGAGTCATGGACGCTTCGCAAGTTGGCGGGGGTGTTTGATTCGTTGCC
CGAGGGTAGCGAGGAAGTACTGGAAGGAGGGGGTGAGAAGGCGGAGAAGT
TGAGGGAATATTATGAGTATCGGGGGAAGGCGAGGGCTACGAAGGAGTGG
GGTGGGAAGAGGTTGTTGTTGGCTATGGTGGATAGGAGGATGGGGGGTGA
TGGGACAGTGGTGTATTATGTTGTGCAGGATGGTGCGGTGAAGCCGAGAC
AGAAT
back to top

Coding sequence (CDS) from alignment at ACJE01000020.1:1017034..1017588-

>ASPNIDRAFT_137492-T1 ID=ASPNIDRAFT_137492-T1|Name=ASPNIDRAFT_137492-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=552bp|location=Sequence derived from alignment at ACJE01000020.1:1017034..1017588- (Aspergillus niger ATCC 1015)
TCCGCCCTCACAACCCTCCTCTCCACCACAACCACAACACCACCCACCCC
CCTCTCCGCAAACACAATCCAAATCCTCCACAACCTCCAACACCAACACC
TCTGGACCTCCCTGCGCGTCCACGACCTCCACCTCCCCAGCAAATCCACC
ACCGAACCTGAACAACCCCTCTACCTCATCTCCGGCATCCCCCCGCACCA
CCTCTACATCCACCCGGACGAGCAGCTGTTTATGCTGGAGCGCGGACTGC
GCGAAGACGACGTCGAGCTCGAGCGCATGTTCGTCCTGCCCACGGTGCAG
GGCGAGTCATGGACGCTTCGCAAGTTGGCGGGGGTGTTTGATTCGTTGCC
CGAGGGTAGCGAGGAAGTACTGGAAGGAGGGGGTGAGAAGGCGGAGAAGT
TGAGGGAATATTATGAGTATCGGGGGAAGGCGAGGGCTACGAAGGAGTGG
GGTGGGAAGAGGTTGTTGTTGGCTATGGTGGATAGGAGGATGGGGGGTGA
TGGGACAGTGGTGTATTATGTTGTGCAGGATGGTGCGGTGAAGCCGAGAC
AG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0000213tRNA-intron endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_137492ASPNIDRAFT_137492Aspergillus niger ATCC 1015gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_137492-T1.cdsASPNIDRAFT_137492-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_137492-T1.utr3p1ASPNIDRAFT_137492-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_137492-T1.exon1ASPNIDRAFT_137492-T1.exon1Aspergillus niger ATCC 1015exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_137492-T1ASPNIDRAFT_137492-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036167
DBxrefInterPro:IPR018593
DBxrefPFAM:PF09631
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000020.1supercontigACJE01000020.1:1017034..1017588 -
Powered by Drupal