You are here

Home

ASPNIDRAFT_172236-T1, ASPNIDRAFT_172236-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_172236-T1
Unique NameASPNIDRAFT_172236-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000004.1:3650093..3651541+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_172236-T1 ID=ASPNIDRAFT_172236-T1|Name=ASPNIDRAFT_172236-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1449bp|location=Sequence derived from alignment at ACJE01000004.1:3650093..3651541+ (Aspergillus niger ATCC 1015)
ATGCCCTCAGCCATCAGTATTGGAGTTTTCGCGGGCCTGAGTCTCGCTGC
TTCGGCCGTACCTTCTCTCCGGAAGAATGGCACTACCTGTACCGTCATCC
CTTTAGGAAACGGACAGGATGATGTCCCCAACATCCTCTCGGCCGTTGAC
GAATGTGGCCAGACCTCTGGAGGGAGAGTTGTCCTCCCAGCGCCGTATAC
CTACCGGATTAACCAACGGATGACGACTCACCTGACCGATTCCCGCCTCG
AGATCGGTGGTACGCTTCTCTTCAGCGACGATATCGACTACTGGGTCAAC
AACTCCTACCGGGTGGACTTCCAGAACCAGTCAAGTGCCTGGCGTATCAC
GGGTCATGACTATGTTGTGGATGGAGGTCCACATCGAGGTGGAGTGGATG
GGAATGGACAGCTGTGGTACACTTGGGCCAAGGGAGGTAGCAATGTCTTC
GGACGACCGATGCCAGTGCATGTGTTCGAGTCGACGCGAGCAACCCTGCG
TAACCTGGCAATCCGACAACCTCAGTTTTGGGCAGTTCTTGTCGATTCCT
CTTCGCACATCAACCTCGATAATTTCTACGTGAATGCCACAAACCATGAC
TCCTCGGTGAGCCCAGAGGGCGAGTGGGTGCAGAATACGGATGGGATCGA
CACGTACCGATCCGACCATATTACAATTACCAACTGGGTGTACCAAGGCG
GAGACGATGCAGTGGCTTTCAAGGGGAACTCGACGAACATCCATGTGGAG
AATGTCACGGTTTATGGCGGACCGGGCATCGCTTTTGGGTCGCTGGGACA
ATACCCCGACCGGACGGATATTGTGGAGAATGTGACGGTTCGGAATGTTC
GAGTAAGTAAGGCTCGGAGGCATGATGGCATTTGAATTGACAGGTATAGG
TGCAACCGTCCTTCCAACGGGCGATGAATTCCGGGGTTTACTTCAAGAGC
TGGTAGGTACCTGGTCCTTCACAGCGATCGCTAGCTGACCAGGCAGGATC
GGGGTCAATTATGGTGTTCCTCCGAATGGTGGCGGGGGCGGCCATGGATA
CGTGCGCAACGTCTCAGTCGAAAACCTTCGACTCAAGGATGTGCAGTTAC
CTGTGTATATTGACACCTGGTGAGGGCGATACCACCATGTTTGAGGTACT
CGGCTAACCCGGGCAGCTTGAGCTATCTCTTCAGCGAGAACATCACGCAG
TATTGTGACACATCGACGTACGAATTCGAGGACCTCCACTTCAGAAACAT
CAGCGGCAATGGACTCGCAACGGTGACTGATTACCCGGGGAAGAATATCA
GCTTCGCCGTGGCTTTGCTTTGTTCTGAGAAGGCACCGTGTACGGACTTG
ACCTTCCAGGACATCAGTATTACGCTTCCAGGGAACTATACTGGCAAACA
TGTACTGTGCGAGAATGCTGAGGTGGAGGGGCTCCCATGCAATTCGTGA
back to top

Coding sequence (CDS) from alignment at ACJE01000004.1:3650093..3651541+

>ASPNIDRAFT_172236-T1 ID=ASPNIDRAFT_172236-T1|Name=ASPNIDRAFT_172236-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=5244bp|location=Sequence derived from alignment at ACJE01000004.1:3650093..3651541+ (Aspergillus niger ATCC 1015)
ATGCCCTCAGCCATCAGTATTGGAGTTTTCGCGGGCCTGAGTCTCGCTGC
TTCGGCCGTACCTTCTCTCCGGAAGAATGGCACTACCTGTACCGTCATCC
CTTTAGGAAACGGACAGGATGATGTCCCCAACATCCTCTCGGCCGTTGAC
GAATGTGGCCAGACCTCTGGAGGGAGAGTTGTCCTCCCAGCGCCGTATAC
CTACCGGATTAACCAACGGATGACGACTCACCTGACCGATTCCCGCCTCG
AGATCGGTGGTACGCTTCTCTTCAGCGACGATATCGACTACTGGGTCAAC
AACTCCTACCGGGTGGACTTCCAGAACCAGTCAAGTGCCTGGCGTATCAC
GGGTCATGACTATGTTGTGGATGGAGGTCCACATCGAGGTGGAGTGGATG
GGAATGGACAGCTGTGGTACACTTGGGCCAAGGGAGGTAGCAATGTCTTC
GGACGACCGATGCCAGTGCATGTGTTCGAGTCGACGCGAGCAACCCTGCG
TAACCTGGCAATCCGACAACCTCAGTTTTGGGCAGTTCTTGTCGATTCCT
CTTCGCACATCAACCTCGATAATTTCTACGTGAATGCCACAAACCATGAC
TCCTCGGTGAGCCCAGAGGGCGAGTGGGTGCAGAATACGGATGGGATCGA
CACGTACCGATCCGACCATATTACAATTACCAACTGGGTGTACCAAGGCG
GAGACGATGCAGTGGCTTTCAAGGGGAACTCGACGAACATCCATGTGGAG
AATGTCACGGTTTATGGCGGACCGGGCATCGCTTTTGGGTCGCTGGGACA
ATACCCCGACCGGACGGATATTGTGGAGAATGTGACGGTTCGGAATGTTC
GAGTGCAACCGTCCTTCCAACGGGCGATGAATTCCGGGGTTTACTTCAAG
AGCTGGATCGGGGTCAATTATGGTGTTCCTCCGAATGGTGGCGGGGGCGG
CCATGGATACGTGCGCAACGTCTCAGTCGAAAACCTTCGACTCAAGGATG
TGCAGTTACCTGTGTATATTGACACCTGCTTGAGCTATCTCTTCAGCGAG
AACATCACGCAGTATTGTGACACATCGACGTACGAATTCGAGGACCTCCA
CTTCAGAAACATCAGCGGCAATGGACTCGCAACGGTGACTGATTACCCGG
GGAAGAATATCAGCTTCGCCGTGGCTTTGCTTTGTTCTGAGAAGGCACCG
TGTACGGACTTGACCTTCCAGGACATCAGTATTACGCTTCCAGGGAACTA
TACTGGCAAACATGTACTGTGCGAGAATGCTGAGGTGGAGGGGCTCCCAT
GCAATTCGTGAATGCCCTCAGCCATCAGTATTGGAGTTTTCGCGGGCCTG
AGTCTCGCTGCTTCGGCCGTACCTTCTCTCCGGAAGAATGGCACTACCTG
TACCGTCATCCCTTTAGGAAACGGACAGGATGATGTCCCCAACATCCTCT
CGGCCGTTGACGAATGTGGCCAGACCTCTGGAGGGAGAGTTGTCCTCCCA
GCGCCGTATACCTACCGGATTAACCAACGGATGACGACTCACCTGACCGA
TTCCCGCCTCGAGATCGGTGGTACGCTTCTCTTCAGCGACGATATCGACT
ACTGGGTCAACAACTCCTACCGGGTGGACTTCCAGAACCAGTCAAGTGCC
TGGCGTATCACGGGTCATGACTATGTTGTGGATGGAGGTCCACATCGAGG
TGGAGTGGATGGGAATGGACAGCTGTGGTACACTTGGGCCAAGGGAGGTA
GCAATGTCTTCGGACGACCGATGCCAGTGCATGTGTTCGAGTCGACGCGA
GCAACCCTGCGTAACCTGGCAATCCGACAACCTCAGTTTTGGGCAGTTCT
TGTCGATTCCTCTTCGCACATCAACCTCGATAATTTCTACGTGAATGCCA
CAAACCATGACTCCTCGGTGAGCCCAGAGGGCGAGTGGGTGCAGAATACG
GATGGGATCGACACGTACCGATCCGACCATATTACAATTACCAACTGGGT
GTACCAAGGCGGAGACGATGCAGTGGCTTTCAAGGGGAACTCGACGAACA
TCCATGTGGAGAATGTCACGGTTTATGGCGGACCGGGCATCGCTTTTGGG
TCGCTGGGACAATACCCCGACCGGACGGATATTGTGGAGAATGTGACGGT
TCGGAATGTTCGAGTGCAACCGTCCTTCCAACGGGCGATGAATTCCGGGG
TTTACTTCAAGAGCTGGATCGGGGTCAATTATGGTGTTCCTCCGAATGGT
GGCGGGGGCGGCCATGGATACGTGCGCAACGTCTCAGTCGAAAACCTTCG
ACTCAAGGATGTGCAGTTACCTGTGTATATTGACACCTGCTTGAGCTATC
TCTTCAGCGAGAACATCACGCAGTATTGTGACACATCGACGTACGAATTC
GAGGACCTCCACTTCAGAAACATCAGCGGCAATGGACTCGCAACGGTGAC
TGATTACCCGGGGAAGAATATCAGCTTCGCCGTGGCTTTGCTTTGTTCTG
AGAAGGCACCGTGTACGGACTTGACCTTCCAGGACATCAGTATTACGCTT
CCAGGGAACTATACTGGCAAACATGTACTGTGCGAGAATGCTGAGGTGGA
GGGGCTCCCATGCAATTCGTGAATGCCCTCAGCCATCAGTATTGGAGTTT
TCGCGGGCCTGAGTCTCGCTGCTTCGGCCGTACCTTCTCTCCGGAAGAAT
GGCACTACCTGTACCGTCATCCCTTTAGGAAACGGACAGGATGATGTCCC
CAACATCCTCTCGGCCGTTGACGAATGTGGCCAGACCTCTGGAGGGAGAG
TTGTCCTCCCAGCGCCGTATACCTACCGGATTAACCAACGGATGACGACT
CACCTGACCGATTCCCGCCTCGAGATCGGTGGTACGCTTCTCTTCAGCGA
CGATATCGACTACTGGGTCAACAACTCCTACCGGGTGGACTTCCAGAACC
AGTCAAGTGCCTGGCGTATCACGGGTCATGACTATGTTGTGGATGGAGGT
CCACATCGAGGTGGAGTGGATGGGAATGGACAGCTGTGGTACACTTGGGC
CAAGGGAGGTAGCAATGTCTTCGGACGACCGATGCCAGTGCATGTGTTCG
AGTCGACGCGAGCAACCCTGCGTAACCTGGCAATCCGACAACCTCAGTTT
TGGGCAGTTCTTGTCGATTCCTCTTCGCACATCAACCTCGATAATTTCTA
CGTGAATGCCACAAACCATGACTCCTCGGTGAGCCCAGAGGGCGAGTGGG
TGCAGAATACGGATGGGATCGACACGTACCGATCCGACCATATTACAATT
ACCAACTGGGTGTACCAAGGCGGAGACGATGCAGTGGCTTTCAAGGGGAA
CTCGACGAACATCCATGTGGAGAATGTCACGGTTTATGGCGGACCGGGCA
TCGCTTTTGGGTCGCTGGGACAATACCCCGACCGGACGGATATTGTGGAG
AATGTGACGGTTCGGAATGTTCGAGTGCAACCGTCCTTCCAACGGGCGAT
GAATTCCGGGGTTTACTTCAAGAGCTGGATCGGGGTCAATTATGGTGTTC
CTCCGAATGGTGGCGGGGGCGGCCATGGATACGTGCGCAACGTCTCAGTC
GAAAACCTTCGACTCAAGGATGTGCAGTTACCTGTGTATATTGACACCTG
CTTGAGCTATCTCTTCAGCGAGAACATCACGCAGTATTGTGACACATCGA
CGTACGAATTCGAGGACCTCCACTTCAGAAACATCAGCGGCAATGGACTC
GCAACGGTGACTGATTACCCGGGGAAGAATATCAGCTTCGCCGTGGCTTT
GCTTTGTTCTGAGAAGGCACCGTGTACGGACTTGACCTTCCAGGACATCA
GTATTACGCTTCCAGGGAACTATACTGGCAAACATGTACTGTGCGAGAAT
GCTGAGGTGGAGGGGCTCCCATGCAATTCGTGAATGCCCTCAGCCATCAG
TATTGGAGTTTTCGCGGGCCTGAGTCTCGCTGCTTCGGCCGTACCTTCTC
TCCGGAAGAATGGCACTACCTGTACCGTCATCCCTTTAGGAAACGGACAG
GATGATGTCCCCAACATCCTCTCGGCCGTTGACGAATGTGGCCAGACCTC
TGGAGGGAGAGTTGTCCTCCCAGCGCCGTATACCTACCGGATTAACCAAC
GGATGACGACTCACCTGACCGATTCCCGCCTCGAGATCGGTGGTACGCTT
CTCTTCAGCGACGATATCGACTACTGGGTCAACAACTCCTACCGGGTGGA
CTTCCAGAACCAGTCAAGTGCCTGGCGTATCACGGGTCATGACTATGTTG
TGGATGGAGGTCCACATCGAGGTGGAGTGGATGGGAATGGACAGCTGTGG
TACACTTGGGCCAAGGGAGGTAGCAATGTCTTCGGACGACCGATGCCAGT
GCATGTGTTCGAGTCGACGCGAGCAACCCTGCGTAACCTGGCAATCCGAC
AACCTCAGTTTTGGGCAGTTCTTGTCGATTCCTCTTCGCACATCAACCTC
GATAATTTCTACGTGAATGCCACAAACCATGACTCCTCGGTGAGCCCAGA
GGGCGAGTGGGTGCAGAATACGGATGGGATCGACACGTACCGATCCGACC
ATATTACAATTACCAACTGGGTGTACCAAGGCGGAGACGATGCAGTGGCT
TTCAAGGGGAACTCGACGAACATCCATGTGGAGAATGTCACGGTTTATGG
CGGACCGGGCATCGCTTTTGGGTCGCTGGGACAATACCCCGACCGGACGG
ATATTGTGGAGAATGTGACGGTTCGGAATGTTCGAGTGCAACCGTCCTTC
CAACGGGCGATGAATTCCGGGGTTTACTTCAAGAGCTGGATCGGGGTCAA
TTATGGTGTTCCTCCGAATGGTGGCGGGGGCGGCCATGGATACGTGCGCA
ACGTCTCAGTCGAAAACCTTCGACTCAAGGATGTGCAGTTACCTGTGTAT
ATTGACACCTGCTTGAGCTATCTCTTCAGCGAGAACATCACGCAGTATTG
TGACACATCGACGTACGAATTCGAGGACCTCCACTTCAGAAACATCAGCG
GCAATGGACTCGCAACGGTGACTGATTACCCGGGGAAGAATATCAGCTTC
GCCGTGGCTTTGCTTTGTTCTGAGAAGGCACCGTGTACGGACTTGACCTT
CCAGGACATCAGTATTACGCTTCCAGGGAACTATACTGGCAAACATGTAC
TGTGCGAGAATGCTGAGGTGGAGGGGCTCCCATGCAATTCGTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172236ASPNIDRAFT_172236Aspergillus niger ATCC 1015gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172236-T1.exon1ASPNIDRAFT_172236-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_172236-T1.exon2ASPNIDRAFT_172236-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_172236-T1.exon3ASPNIDRAFT_172236-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_172236-T1.exon4ASPNIDRAFT_172236-T1.exon4Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172236-T1.cdsASPNIDRAFT_172236-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_172236-T1ASPNIDRAFT_172236-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
NoteSECRETED:SignalP(1-19)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
Productputative rhamnogalacturonase A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000004.1supercontigACJE01000004.1:3650093..3651541 +
Powered by Drupal