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ASPNIDRAFT_182156-T1, ASPNIDRAFT_182156-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_182156-T1
Unique NameASPNIDRAFT_182156-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000008.1:1288539..1289679-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_182156-T1 ID=ASPNIDRAFT_182156-T1|Name=ASPNIDRAFT_182156-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1141bp|location=Sequence derived from alignment at ACJE01000008.1:1288539..1289679- (Aspergillus niger ATCC 1015)
ATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCAC
CTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCA
CCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTT
AACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCAC
CAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAG
AATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACT
GGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGG
CAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCC
TTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATG
GCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAA
TAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATG
TTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAG
GATGACTGTCTTGCGGTTAACTCTGGCGAGGTAAGCAGCTCTGCATATAT
GCTTGATTCGTAATTATATTGATATTCTATAGAACATCTGGTTCACCGGC
GGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCGGCGACCG
CTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACCGTGAGCA
ATTCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCACTGGCTCC
GTGTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCTCCGATTA
CGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACGGGTAAGC
CGACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGTGACTGGT
AGCGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGTCTGGTAG
CTGCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGGAAGAAGT
CCACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGTTAG
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Coding sequence (CDS) from alignment at ACJE01000008.1:1288539..1289679-

>ASPNIDRAFT_182156-T1 ID=ASPNIDRAFT_182156-T1|Name=ASPNIDRAFT_182156-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2178bp|location=Sequence derived from alignment at ACJE01000008.1:1288539..1289679- (Aspergillus niger ATCC 1015)
AACATCTGGTTCACCGGCGGCACCTGCATTGGCGGCCACGGTCTCTCCAT
CGGCTCTGTCGGCGACCGCTCCAACAACGTCGTCAAGAACGTCACCATCG
AACACTCCACCGTGAGCAATTCCGAAAACGCCGTCCGAATTAAGACCATC
TCTGGCGCCACTGGCTCCGTGTCCGAGATTACGTACTCCAACATCGTCAT
GTCTGGCATCTCCGATTACGGCGTGGTCATTCAGCAGGATTACGAAGACG
GCAAGCCTACGGGTAAGCCGACGAACGGTGTCACTATTCAGGATGTTAAG
CTGGAGAGCGTGACTGGTAGCGTGGATAGTGGGGCTACTGAGATCTATCT
TCTTTGCGGGTCTGGTAGCTGCTCGGACTGGACCTGGGACGATGTGAAAG
TTACCGGGGGGAAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTGGCC
TCTTGTTAGATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGC
CGGCGCCACCTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCA
CGTTCACCACCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACT
ATCACCCTTAACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGAC
CGGTCTCACCAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCC
AGTACGAAGAATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATC
ACCGTCACTGGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTG
GTGGGATGGCAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACG
CCCATGGCCTTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACC
CCCCTTATGGCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGT
TACCATCAATAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATG
CGTTCGATGTTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTC
CATAACCAGGATGACTGTCTTGCGGTTAACTCTGGCGAGAACATCTGGTT
CACCGGCGGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCG
GCGACCGCTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACC
GTGAGCAATTCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCAC
TGGCTCCGTGTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCT
CCGATTACGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACG
GGTAAGCCGACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGT
GACTGGTAGCGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGT
CTGGTAGCTGCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGG
AAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGTTAGAT
GCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCACCT
TCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCACC
GCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTTAA
CAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCACCA
GCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAGAA
TGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACTGG
TGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGGCA
AGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCCTT
GACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATGGC
GTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAATA
ATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATGTT
GGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAGGA
TGACTGTCTTGCGGTTAACTCTGGCGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_182156ASPNIDRAFT_182156Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_182156-T1ASPNIDRAFT_182156-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_182156-T1.cdsASPNIDRAFT_182156-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_182156-T1.exon2ASPNIDRAFT_182156-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_182156-T1.exon1ASPNIDRAFT_182156-T1.exon1Aspergillus niger ATCC 1015exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-21)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
ProductEndopolygalacturonase-2 precursor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000008.1supercontigACJE01000008.1:1288539..1289679 -
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