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ASPNIDRAFT_185487-T1, ASPNIDRAFT_185487-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_185487-T1
Unique NameASPNIDRAFT_185487-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000002.1:127841..129402-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_185487-T1 ID=ASPNIDRAFT_185487-T1|Name=ASPNIDRAFT_185487-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1562bp|location=Sequence derived from alignment at ACJE01000002.1:127841..129402- (Aspergillus niger ATCC 1015)
ATGGCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGC
TGGCACTGTCTTCTACAAACTTTACCAGCAGCCATCAACGGCTCTCGCCA
TTTTCAGGCGCATGCTGCCTGATCTGGGTATGTGTCGCATGTGCATTCAC
CACTCCGGTGCTTCATCAACTAACTGCCTGACTAGCAAAATGCTTTGTCA
TGGCACTTCTCTACCTAAAGGATCCGCTCCCCGCGGCGGATCTGGAGGCT
TGGGTTAAATCGGAGAGCTTGAAGTAAGTGCGGGTCAAGCACCCTGGGAA
GGTTTCCGCAGTGATTGTGGTTAACGTGAGCCTCACACAGAGAACGCGAC
AATGCACTCTCCATCCTAGGAAGACTGCATATTTTATCCAACACTGTTAC
GGCGGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTCGCCACTTCAT
TGCGACACGCTCTCACCGGCGCCGACCAAACACAATCTTTTGGCGTCCTT
TCACAAGTGCCTGTTGGCTCGGAAGTCTCGATCCCCGAACTTGATGAGTA
TGCGCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTCGGTACTGGAG
GCATGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTG
CAGGCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCGAAATCACCCA
GGATGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAGGTGTGGCATA
TCTTGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGATGGACAGTGTC
GAAGTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATC
ATATGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATGCTGACCGACC
TTGCCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGCACCGCGTTTC
TACCCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCAGCGCCTTGAG
CAACCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCA
AAGCGGGTACGGGCTTCATCATTATCGAAACCAACTACCGTGTATACGCA
TACACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGTTCACCACACT
GAAATACCGCTTCCCCAACCTCATCACCGGCAAAATCACCCGCCAATCCG
TCCGCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAATCATTTCCTAT
CTCTCTACTCACGCCCACCCGCAAATGCGCAAGCACAACGTCTCCCGCTC
GACCTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGG
TGGACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACG
TCCGGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAATACGAAGCGCC
ATGTCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAGTCGGATCGCA
AACGCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGCGTTCTTAAGG
AGCCGGAAATAA
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Coding sequence (CDS) from alignment at ACJE01000002.1:127841..129402-

>ASPNIDRAFT_185487-T1 ID=ASPNIDRAFT_185487-T1|Name=ASPNIDRAFT_185487-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=4311bp|location=Sequence derived from alignment at ACJE01000002.1:127841..129402- (Aspergillus niger ATCC 1015)
AGAACGCGACAATGCACTCTCCATCCTAGGAAGACTGCATATTTTATCCA
ACACTGTTACGGCGGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTC
GCCACTTCATTGCGACACGCTCTCACCGGCGCCGACCAAACACAATCTTT
TGGCGTCCTTTCACAAGTGCCTGTTGGCTCGGAAGTCTCGATCCCCGAAC
TTGATGAGTATGCGCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTC
GGTACTGGAGGCATGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAA
GGAGCTCCTGCAGGCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCG
AAATCACCCAGGATGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAG
GTGTGGCATATCTTGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGAT
GGACAGTGTCGAAGTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAAC
TCGGAAAATCATATGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATG
CTGACCGACCTTGCCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGC
ACCGCGTTTCTACCCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCA
GCGCCTTGAGCAACCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAA
GCCTCCAGCAAAGCGGGTACGGGCTTCATCATTATCGAAACCAACTACCG
TGTATACGCATACACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGT
TCACCACACTGAAATACCGCTTCCCCAACCTCATCACCGGCAAAATCACC
CGCCAATCCGTCCGCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAAT
CATTTCCTATCTCTCTACTCACGCCCACCCGCAAATGCGCAAGCACAACG
TCTCCCGCTCGACCTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCG
CCAACCGTGGTGGACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGT
CAAAGCTACGTCCGGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAAT
ACGAAGCGCCATGTCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAG
TCGGATCGCAAACGCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGC
GTTCTTAAGGAGCCGGAAATAACAAAATGCTTTGTCATGGCACTTCTCTA
CCTAAAGGATCCGCTCCCCGCGGCGGATCTGGAGGCTTGGGTTAAATCGG
AGAGCTTGAAATGGCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCG
AAAGCCTTGCTGGCACTGTCTTCTACAAACTTTACCAGCAGCCATCAACG
GCTCTCGCCATTTTCAGGCGCATGCTGCCTGATCTGGAGAACGCGACAAT
GCACTCTCCATCCTAGGAAGACTGCATATTTTATCCAACACTGTTACGGC
GGATAATGTCCGCGCCTACAAAGTCACCGATCCCTTCGCCACTTCATTGC
GACACGCTCTCACCGGCGCCGACCAAACACAATCTTTTGGCGTCCTTTCA
CAAGTGCCTGTTGGCTCGGAAGTCTCGATCCCCGAACTTGATGAGTATGC
GCGACGACAGTGGGAAGGAGTGCTGGGATACATGGTCGGTACTGGAGGCA
TGGGAGGTCCCCAAGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTGCAG
GCGGGTCATCTGGTCGAGATCCGAGATCGTCGCGTCGAAATCACCCAGGA
TGGGTTTGCCTTTGTCCTGCAAGATGTCAGCACGCAGGTGTGGCATATCT
TGATTCTTTACGTCGAGAGCGCCAGCGCCATCAAGATGGACAGTGTCGAA
GTCCTCTCGTTCGTGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATCATA
TGAAAAGAACCACCTCAGTTCGAAACAACTGCGCATGCTGACCGACCTTG
CCGACTTTGGTATCGTCTATCAAGAATCGCCGGATGCACCGCGTTTCTAC
CCCACCCGTCTTGCAACCACCCTCACGTCCGACTCCAGCGCCTTGAGCAA
CCCACTCTTGGGTTCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCAAAG
CGGGTACGGGCTTCATCATTATCGAAACCAACTACCGTGTATACGCATAC
ACCTCGTCTCCCCTACAGATCTCCCTGATTGCTCTGTTCACCACACTGAA
ATACCGCTTCCCCAACCTCATCACCGGCAAAATCACCCGCCAATCCGTCC
GCCGGGCCGTCGAGATGGGCATCACCGCCGACCAAATCATTTCCTATCTC
TCTACTCACGCCCACCCGCAAATGCGCAAGCACAACGTCTCCCGCTCGAC
CTCAAACCAGGCCGGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGGTGG
ACCAGATTCGACTTTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACGTCC
GGATTCCTTTTCAAGGACTTTGTCAGTCTGGCAGAATACGAAGCGCCATG
TCGCTATGCCGAAGAAATCGGTGTTCTGGCATGGAAGTCGGATCGCAAAC
GCATGTTCTTCGTGACGAGGCATGAACAAGTGGCTGCGTTCTTAAGGAGC
CGGAAATAACAAAATGCTTTGTCATGGCACTTCTCTACCTAAAGGATCCG
CTCCCCGCGGCGGATCTGGAGGCTTGGGTTAAATCGGAGAGCTTGAAATG
GCTGCCGCACCATCTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGCTGG
CACTGTCTTCTACAAACTTTACCAGCAGCCATCAACGGCTCTCGCCATTT
TCAGGCGCATGCTGCCTGATCTGGAGAACGCGACAATGCACTCTCCATCC
TAGGAAGACTGCATATTTTATCCAACACTGTTACGGCGGATAATGTCCGC
GCCTACAAAGTCACCGATCCCTTCGCCACTTCATTGCGACACGCTCTCAC
CGGCGCCGACCAAACACAATCTTTTGGCGTCCTTTCACAAGTGCCTGTTG
GCTCGGAAGTCTCGATCCCCGAACTTGATGAGTATGCGCGACGACAGTGG
GAAGGAGTGCTGGGATACATGGTCGGTACTGGAGGCATGGGAGGTCCCCA
AGTGACCCTCAGCAAAGGCGTGAAGGAGCTCCTGCAGGCGGGTCATCTGG
TCGAGATCCGAGATCGTCGCGTCGAAATCACCCAGGATGGGTTTGCCTTT
GTCCTGCAAGATGTCAGCACGCAGGTGTGGCATATCTTGATTCTTTACGT
CGAGAGCGCCAGCGCCATCAAGATGGACAGTGTCGAAGTCCTCTCGTTCG
TGTTCCTTCTCAGCAGTCTCGAACTCGGAAAATCATATGAAAAGAACCAC
CTCAGTTCGAAACAACTGCGCATGCTGACCGACCTTGCCGACTTTGGTAT
CGTCTATCAAGAATCGCCGGATGCACCGCGTTTCTACCCCACCCGTCTTG
CAACCACCCTCACGTCCGACTCCAGCGCCTTGAGCAACCCACTCTTGGGT
TCCCTCTCCGGTCCTGCTGGCGAAGCCTCCAGCAAAGCGGGTACGGGCTT
CATCATTATCGAAACCAACTACCGTGTATACGCATACACCTCGTCTCCCC
TACAGATCTCCCTGATTGCTCTGTTCACCACACTGAAATACCGCTTCCCC
AACCTCATCACCGGCAAAATCACCCGCCAATCCGTCCGCCGGGCCGTCGA
GATGGGCATCACCGCCGACCAAATCATTTCCTATCTCTCTACTCACGCCC
ACCCGCAAATGCGCAAGCACAACGTCTCCCGCTCGACCTCAAACCAGGCC
GGGATCCCCCCGTCAGTCCTCCCGCCAACCGTGGTGGACCAGATTCGACT
TTGGCAGCTGGAGCGGGACCGTGTCAAAGCTACGTCCGGATTCCTTTTCA
AGGACTTTGTCAGTCTGGCAGAATACGAAGCGCCATGTCGCTATGCCGAA
GAAATCGGTGTTCTGGCATGGAAGTCGGATCGCAAACGCATGTTCTTCGT
GACGAGGCATGAACAAGTGGCTGCGTTCTTAAGGAGCCGGAAATAACAAA
ATGCTTTGTCATGGCACTTCTCTACCTAAAGGATCCGCTCCCCGCGGCGG
ATCTGGAGGCTTGGGTTAAATCGGAGAGCTTGAAATGGCTGCCGCACCAT
CTTCTCGTCCCTTTGAATACCTCGAAAGCCTTGCTGGCACTGTCTTCTAC
AAACTTTACCAGCAGCCATCAACGGCTCTCGCCATTTTCAGGCGCATGCT
GCCTGATCTGG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0001671ATPase activator activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_185487ASPNIDRAFT_185487Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_185487-T1ASPNIDRAFT_185487-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_185487-T1.cdsASPNIDRAFT_185487-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_185487-T1.exon3ASPNIDRAFT_185487-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_185487-T1.exon2ASPNIDRAFT_185487-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_185487-T1.exon1ASPNIDRAFT_185487-T1.exon1Aspergillus niger ATCC 1015exon


Properties
Property NameValue
NoteBUSCO:EOG09261QR8
DBxrefInterPro:IPR040662
DBxrefInterPro:IPR004598
DBxrefPFAM:PF18307
DBxrefPFAM:PF03849
Producttranscription factor Tfb2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000002.1supercontigACJE01000002.1:127841..129402 -
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