You are here

Home

ASPNIDRAFT_198624-T1, ASPNIDRAFT_198624-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_198624-T1
Unique NameASPNIDRAFT_198624-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000021.1:1068967..1069696-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_198624-T1 ID=ASPNIDRAFT_198624-T1|Name=ASPNIDRAFT_198624-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=730bp|location=Sequence derived from alignment at ACJE01000021.1:1068967..1069696- (Aspergillus niger ATCC 1015)
GACGCTATTTTCACAGTCCAGACCCCACTCTACCTTGTCGGCGCCATGTT
GTACGAACTGATCGCTGTTGTATGTTTCCTGGCGATTCTGTTGGATGACT
TTAACTATGTGCTTTGGATTGATGCTAATTGACGAGTGCAGGTCCGTCCC
GGTAGCCTCCAGGAGGTTAGAGAGTACGTGCCTGCCGACCCTATCTGACC
ACCTCATATCCTTACGCAACATCCTACTATCGCCAAACCATCATTATCCA
CGAATTTTCACTGACAGACGACAGTATCGCCCGCAATGCCGGCATCCAGG
TTCTCCGCTCCGGCGGCGTAGTCCGCGGATTCACCAACTGGGGTACCTTC
CGTCTGCCCAGGCCCACGACGAAGCATCAGGCCCGCTACAGGGAAGGCCA
CCACTTCATCATGCGCTTCGATGCCTCCGGTCCCGTGCAAGCGGCTGTCC
GCAGAACTCTTGGTCTCGATCCCCGGATGGTTCGGTTCTCCGTTGTCAAG
TTGGGCGACAAGCTGGAGGAAATCAAGCACGTCGATGGCAAGGTTGAGTG
GAACAACAACCGTAGCATCTCCGAAACGTTTTAAATGTGTTTTGAATGTG
ATGCGGATTGGTTGCAGCTTTGCGATTGTTCGTCGTTTGGGACATGGAAA
ATGATTTAATTGTCAATGTATTATCTATGGGATGGGTTTCTTTGTATATC
ATATCAGCATTATCGGCGCATATACCTTAC
back to top

Coding sequence (CDS) from alignment at ACJE01000021.1:1068967..1069696-

>ASPNIDRAFT_198624-T1 ID=ASPNIDRAFT_198624-T1|Name=ASPNIDRAFT_198624-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1098bp|location=Sequence derived from alignment at ACJE01000021.1:1068967..1069696- (Aspergillus niger ATCC 1015)
TATCGCCCGCAATGCCGGCATCCAGGTTCTCCGCTCCGGCGGCGTAGTCC
GCGGATTCACCAACTGGGGTACCTTCCGTCTGCCCAGGCCCACGACGAAG
CATCAGGCCCGCTACAGGGAAGGCCACCACTTCATCATGCGCTTCGATGC
CTCCGGTCCCGTGCAAGCGGCTGTCCGCAGAACTCTTGGTCTCGATCCCC
GGATGGTTCGGTTCTCCGTTGTCAAGTTGGGCGACAAGCTGGAGGAAATC
AAGCACGTCGATGGCAAGGTTGAGTGGAACAACAACCGTAGCATCTCCGA
AACGTTTTAAGTCCGTCCCGGTAGCCTCCAGGAGGTTAGAGAATGTTGTA
CGAACTGATCGCTGTTTATCGCCCGCAATGCCGGCATCCAGGTTCTCCGC
TCCGGCGGCGTAGTCCGCGGATTCACCAACTGGGGTACCTTCCGTCTGCC
CAGGCCCACGACGAAGCATCAGGCCCGCTACAGGGAAGGCCACCACTTCA
TCATGCGCTTCGATGCCTCCGGTCCCGTGCAAGCGGCTGTCCGCAGAACT
CTTGGTCTCGATCCCCGGATGGTTCGGTTCTCCGTTGTCAAGTTGGGCGA
CAAGCTGGAGGAAATCAAGCACGTCGATGGCAAGGTTGAGTGGAACAACA
ACCGTAGCATCTCCGAAACGTTTTAAGTCCGTCCCGGTAGCCTCCAGGAG
GTTAGAGAATGTTGTACGAACTGATCGCTGTTTATCGCCCGCAATGCCGG
CATCCAGGTTCTCCGCTCCGGCGGCGTAGTCCGCGGATTCACCAACTGGG
GTACCTTCCGTCTGCCCAGGCCCACGACGAAGCATCAGGCCCGCTACAGG
GAAGGCCACCACTTCATCATGCGCTTCGATGCCTCCGGTCCCGTGCAAGC
GGCTGTCCGCAGAACTCTTGGTCTCGATCCCCGGATGGTTCGGTTCTCCG
TTGTCAAGTTGGGCGACAAGCTGGAGGAAATCAAGCACGTCGATGGCAAG
GTTGAGTGGAACAACAACCGTAGCATCTCCGAAACGTTTTAAGTCCGTCC
CGGTAGCCTCCAGGAGGTTAGAGAATGTTGTACGAACTGATCGCTGTT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_198624ASPNIDRAFT_198624Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_198624-T1ASPNIDRAFT_198624-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_198624-T1.cdsASPNIDRAFT_198624-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_198624-T1.utr3p1ASPNIDRAFT_198624-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_198624-T1.exon3ASPNIDRAFT_198624-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_198624-T1.exon2ASPNIDRAFT_198624-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_198624-T1.exon1ASPNIDRAFT_198624-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_198624-T1.utr5p1ASPNIDRAFT_198624-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR035980
DBxrefInterPro:IPR000529
DBxrefInterPro:IPR014717
DBxrefPFAM:PF01250
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000021.1supercontigACJE01000021.1:1068967..1069696 -
Powered by Drupal