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ASPNIDRAFT_200276-T1, ASPNIDRAFT_200276-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_200276-T1
Unique NameASPNIDRAFT_200276-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000009.1:659913..661169+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_200276-T1 ID=ASPNIDRAFT_200276-T1|Name=ASPNIDRAFT_200276-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1257bp|location=Sequence derived from alignment at ACJE01000009.1:659913..661169+ (Aspergillus niger ATCC 1015)
CTCACAACCCGTTCGACAACCACCCCGTCAACACCACCAATCAATCAAAA
TGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCCC
TACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTGT
TGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATCG
GTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCACT
GGTAAGATTCCCCTCTCAATTCTCAAATTGCGGGGATGGGAAGGATACTA
ATATGTGGATGAATAGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGG
TACGACATCACCGACATGTTCCCTTTCACCAGTCGCACCAGTTATATGAG
CATGTTGTGGATGTGAATATGGCAGCGGAATATGGAATAGGCGCGAGCAG
AGCAGCAGCTAGGACCCGGATTGGAATATATCCGGCGATTCGATTTCAGC
CAGGTCACGGGTTTGATTGATGGACAACGATACGATGTATTCTGCACGGA
AGTGAAGAAGAAGGAAGAGAACGAGGTTGAAACATACCCGGAATCGTTCT
CGACTCCGTATCGACATGGACACTCGCAAACCTACAGCCAATCGCAATCG
CAGCAATCCCGGCGCTCTCTGCCTCCCACCATCTCTACACCGCACACCCA
CAACATGTCCATAAAACTGGAGGGCACCAGAAGCAAAACTTCAACACCAA
CTCGCAGAAATGCAGTTGGATGTTGGAAGTTTCTTTTGCGTGATCCCGTA
TGCCTCTGCTTGGTCAAACCACAGGCTGACAGAGTGATCTATTAAACAGG
CCTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGTAT
GCCATTCCCCATTTATCTGAAAACACGATGGTAGATTGAATACTAACAAA
CTGGTATTAGGCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGG
ACAAGGACAGCAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCGT
CTGTCTCGTTACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTA
CGAGTCCGCCACTGCTTCCACCCTCGTTGCTTAAGCGCGTGCACTTCTTG
TGCTGGGGTAGAAGTTGTTGTGGTGAAGTGGCTGTCGTCGTGGTTGATTG
GGTCGATCTGGAAGGGTTGATTCGCGATAGTCATGAAATAAAATTATGAC
CACACTA
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Coding sequence (CDS) from alignment at ACJE01000009.1:659913..661169+

>ASPNIDRAFT_200276-T1 ID=ASPNIDRAFT_200276-T1|Name=ASPNIDRAFT_200276-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1824bp|location=Sequence derived from alignment at ACJE01000009.1:659913..661169+ (Aspergillus niger ATCC 1015)
ATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCC
CTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTG
TTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATC
GGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCAC
TGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCCCCGAGC
TCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTCCGCAAG
CACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCTGATTCT
CATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCGTCGGTG
TCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACCCTCGTT
GCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGC
TCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGC
AGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCC
CAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGAC
TGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCC
CCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTC
CGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCT
GATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCG
TCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACC
CTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTC
CTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCA
CCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACC
CCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGT
CAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCC
TTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTC
GCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTT
CCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACA
AGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCT
TCCACCCTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCAT
TTCGTCCTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGG
CTTCCACCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGT
GCTACCCCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGC
CCAGGTCAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCA
ACGGCCTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAG
GCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAG
CAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTT
ACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCC
ACTGCTTCCACCCTCGTTGCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS13ASPNIDRAFT_200276Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200276-T1ASPNIDRAFT_200276-T1-proteinAspergillus niger ATCC 1015polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200276-T1.utr5p1ASPNIDRAFT_200276-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200276-T1.exon1ASPNIDRAFT_200276-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_200276-T1.exon2ASPNIDRAFT_200276-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_200276-T1.exon3ASPNIDRAFT_200276-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_200276-T1.exon4ASPNIDRAFT_200276-T1.exon4Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200276-T1.cdsASPNIDRAFT_200276-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200276-T1.utr3p1ASPNIDRAFT_200276-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG0926514P
DBxrefInterPro:IPR009068
DBxrefInterPro:IPR023029
DBxrefInterPro:IPR000589
DBxrefInterPro:IPR012606
DBxrefPFAM:PF00312
DBxrefPFAM:PF08069
Productribosomal 40S subunit protein S13
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000009.1supercontigACJE01000009.1:659913..661169 +
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