You are here

Home

ASPNIDRAFT_200314-T1, ASPNIDRAFT_200314-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_200314-T1
Unique NameASPNIDRAFT_200314-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000009.1:504651..505410-

Legend: CDSpolypeptideexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_200314-T1 ID=ASPNIDRAFT_200314-T1|Name=ASPNIDRAFT_200314-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=760bp|location=Sequence derived from alignment at ACJE01000009.1:504651..505410- (Aspergillus niger ATCC 1015)
ATGTCTCTTAAACCCATTACCCTCTACGGCCACACCATGGGCCCCAACCC
CTGGAAAGTGGCCATGGTACTCGAAGAGCTCGAAATTCCCTACAAGACGA
TATACATAGCTGCTGCAGACGTCAAGAAAGAACCATTAACCTTGGTCAAC
CCCAATGGCCGCGTGCCCGCTATCGAGGACCCCAACACAGGAATCACCCT
GTGGGAGTCAGGCGCCATTATCGAATATCTCTCCGAAACCTACGACAAAG
ACAATAAGATCAGTTTCCCAGCTGGTACCCCTGAGTACTTCCAAACAAAA
CAATGGCTCCACTTCCAGATGAGTGGGCAGGGCCCGTACTTTGGTCAGGC
TGTTTGGTTCCGGCGACACCACCCTGAAGTGGTTCCTAGTGCTCAGGAGA
GATACAAGAACGAGGTTCTTCGGGTGTCATGGGTGCTAGACAACGTTCTT
AAAGATAGGGAGTACCTAGTTGGCGGACGGTGTAGCTACGCGGACATCTC
GTTCGTGCAGTGGTTTAATGTCTTTGGAATCGCCACGGATAATGATGTTG
ACATGGAGAAGGAGTACCCAAATCTTTACTCTTGGCTCGAAAAGATCAAA
GCAAGGCCGGCTATCACCAGAACTGCCGAACTACAGAAGGAAGCAATTGC
GAATGAGAAGCACTGAGTGAAAGTGGATTTGGAGCGTCATTCAACCTAGG
ATGTCTATCGGGGATTGTAGAAGTCATTGCAAATTTGTTTTATGCTCCTG
AAGTCCGGAT
back to top

Coding sequence (CDS) from alignment at ACJE01000009.1:504651..505410-

>ASPNIDRAFT_200314-T1 ID=ASPNIDRAFT_200314-T1|Name=ASPNIDRAFT_200314-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=666bp|location=Sequence derived from alignment at ACJE01000009.1:504651..505410- (Aspergillus niger ATCC 1015)
ATGTCTCTTAAACCCATTACCCTCTACGGCCACACCATGGGCCCCAACCC
CTGGAAAGTGGCCATGGTACTCGAAGAGCTCGAAATTCCCTACAAGACGA
TATACATAGCTGCTGCAGACGTCAAGAAAGAACCATTAACCTTGGTCAAC
CCCAATGGCCGCGTGCCCGCTATCGAGGACCCCAACACAGGAATCACCCT
GTGGGAGTCAGGCGCCATTATCGAATATCTCTCCGAAACCTACGACAAAG
ACAATAAGATCAGTTTCCCAGCTGGTACCCCTGAGTACTTCCAAACAAAA
CAATGGCTCCACTTCCAGATGAGTGGGCAGGGCCCGTACTTTGGTCAGGC
TGTTTGGTTCCGGCGACACCACCCTGAAGTGGTTCCTAGTGCTCAGGAGA
GATACAAGAACGAGGTTCTTCGGGTGTCATGGGTGCTAGACAACGTTCTT
AAAGATAGGGAGTACCTAGTTGGCGGACGGTGTAGCTACGCGGACATCTC
GTTCGTGCAGTGGTTTAATGTCTTTGGAATCGCCACGGATAATGATGTTG
ACATGGAGAAGGAGTACCCAAATCTTTACTCTTGGCTCGAAAAGATCAAA
GCAAGGCCGGCTATCACCAGAACTGCCGAACTACAGAAGGAAGCAATTGC
GAATGAGAAGCACTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200314ASPNIDRAFT_200314Aspergillus niger ATCC 1015gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200314-T1.cdsASPNIDRAFT_200314-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200314-T1.utr3p1ASPNIDRAFT_200314-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200314-T1.exon1ASPNIDRAFT_200314-T1.exon1Aspergillus niger ATCC 1015exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_200314-T1ASPNIDRAFT_200314-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036249
DBxrefInterPro:IPR036282
DBxrefInterPro:IPR010987
DBxrefInterPro:IPR040079
DBxrefInterPro:IPR004045
DBxrefInterPro:IPR004046
DBxrefPFAM:PF13417
DBxrefPFAM:PF13409
DBxrefPFAM:PF02798
DBxrefPFAM:PF14497
DBxrefPFAM:PF00043
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000009.1supercontigACJE01000009.1:504651..505410 -
Powered by Drupal