You are here

Home

ASPNIDRAFT_203893-T1, ASPNIDRAFT_203893-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_203893-T1
Unique NameASPNIDRAFT_203893-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000015.1:857025..857877-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_203893-T1 ID=ASPNIDRAFT_203893-T1|Name=ASPNIDRAFT_203893-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=853bp|location=Sequence derived from alignment at ACJE01000015.1:857025..857877- (Aspergillus niger ATCC 1015)
TGCACATCCTGCTACCCTTTTTCTTTCTTTCCTTCTAGAACTCAAATCTT
CTCCCACTATCTCAACATGTCTGCCATTGCCTCAGCGCTGCGCCCTACCC
TCCGCGCCTCCTCCGGCGCCGCCCTGTCCACGCGTTCCTTCAGCTCTTCC
TCATCCCGTTCCATTGCTCGTATCATGATTACGGGTCGTCTGGCTGGCCA
ACCCGAGGTGCAGGCCACCGCTTCTGGCCAAGAAGTCATCAGATACACCG
TGGCCTCTAACCAGAACTCGAAGGATAAGCGCCCGCCGAGCTTCTTCAAG
GTGTCGGCCTTCAGTGAGGGAAACCAGCGCGAGTTCATCACCAACTTGCA
GACGGGGTAAGTCTTCCTGCCCGTTAACTTTAATCTTTCCTTCGAACCGC
AGATATGCGTGTTTGCTGTTTCATTTGTCTCCTCTGAATGCGGCGTTTAA
TTCACATCCTCTTCGGGTCTCACTATCCAATCCGCTAACTTTCTTTTCTT
GTCACCAGTACTCTTGTGTTTGTCGAGGGAGACGCGACCATGCGCCAGTG
GGAGAACGCAGAGGGCAAGAAGCAGACGGCCCTGAACATCACCCAGCGTA
CGTTATCGTCCACATCCGCCCCTTAAATCATGTGAAAACAAACTACATAC
TCCCTTATACTGTATTGCGGAAGTACTAATATGTCCTACTTATAATCCGC
AGGCGCTCTTGAGGTCCTCAAGCGTCCATACAACCCTGAAGCCTTCTCTG
AGGAGCAGCAGCAGGAGTAGGAGAGAACAAGCTAAGATCGGATAATACGG
TAAGAGTGGCACTTATCAATAATACCGGGTGGCAGGATGATGTAGTTGTC
TTG
back to top

Coding sequence (CDS) from alignment at ACJE01000015.1:857025..857877-

>ASPNIDRAFT_203893-T1 ID=ASPNIDRAFT_203893-T1|Name=ASPNIDRAFT_203893-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1341bp|location=Sequence derived from alignment at ACJE01000015.1:857025..857877- (Aspergillus niger ATCC 1015)
GCGCTCTTGAGGTCCTCAAGCGTCCATACAACCCTGAAGCCTTCTCTGAG
GAGCAGCAGCAGGAGTAGTACTCTTGTGTTTGTCGAGGGAGACGCGACCA
TGCGCCAGTGGGAGAACGCAGAGGGCAAGAAGCAGACGGCCCTGAACATC
ACCCAGCATGTCTGCCATTGCCTCAGCGCTGCGCCCTACCCTCCGCGCCT
CCTCCGGCGCCGCCCTGTCCACGCGTTCCTTCAGCTCTTCCTCATCCCGT
TCCATTGCTCGTATCATGATTACGGGTCGTCTGGCTGGCCAACCCGAGGT
GCAGGCCACCGCTTCTGGCCAAGAAGTCATCAGATACACCGTGGCCTCTA
ACCAGAACTCGAAGGATAAGCGCCCGCCGAGCTTCTTCAAGGTGTCGGCC
TTCAGTGAGGGAAACCAGCGCGAGTTCATCACCAACTTGCAGACGGGGCG
CTCTTGAGGTCCTCAAGCGTCCATACAACCCTGAAGCCTTCTCTGAGGAG
CAGCAGCAGGAGTAGTACTCTTGTGTTTGTCGAGGGAGACGCGACCATGC
GCCAGTGGGAGAACGCAGAGGGCAAGAAGCAGACGGCCCTGAACATCACC
CAGCATGTCTGCCATTGCCTCAGCGCTGCGCCCTACCCTCCGCGCCTCCT
CCGGCGCCGCCCTGTCCACGCGTTCCTTCAGCTCTTCCTCATCCCGTTCC
ATTGCTCGTATCATGATTACGGGTCGTCTGGCTGGCCAACCCGAGGTGCA
GGCCACCGCTTCTGGCCAAGAAGTCATCAGATACACCGTGGCCTCTAACC
AGAACTCGAAGGATAAGCGCCCGCCGAGCTTCTTCAAGGTGTCGGCCTTC
AGTGAGGGAAACCAGCGCGAGTTCATCACCAACTTGCAGACGGGGCGCTC
TTGAGGTCCTCAAGCGTCCATACAACCCTGAAGCCTTCTCTGAGGAGCAG
CAGCAGGAGTAGTACTCTTGTGTTTGTCGAGGGAGACGCGACCATGCGCC
AGTGGGAGAACGCAGAGGGCAAGAAGCAGACGGCCCTGAACATCACCCAG
CATGTCTGCCATTGCCTCAGCGCTGCGCCCTACCCTCCGCGCCTCCTCCG
GCGCCGCCCTGTCCACGCGTTCCTTCAGCTCTTCCTCATCCCGTTCCATT
GCTCGTATCATGATTACGGGTCGTCTGGCTGGCCAACCCGAGGTGCAGGC
CACCGCTTCTGGCCAAGAAGTCATCAGATACACCGTGGCCTCTAACCAGA
ACTCGAAGGATAAGCGCCCGCCGAGCTTCTTCAAGGTGTCGGCCTTCAGT
GAGGGAAACCAGCGCGAGTTCATCACCAACTTGCAGACGGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_203893ASPNIDRAFT_203893Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_203893-T1ASPNIDRAFT_203893-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_203893-T1.cdsASPNIDRAFT_203893-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_203893-T1.utr3p1ASPNIDRAFT_203893-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_203893-T1.exon3ASPNIDRAFT_203893-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_203893-T1.exon2ASPNIDRAFT_203893-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_203893-T1.exon1ASPNIDRAFT_203893-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_203893-T1.utr5p1ASPNIDRAFT_203893-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
NoteEggNog:ENOG41
NoteBUSCO:EOG09265JNA
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR000424
DBxrefInterPro:IPR011344
DBxrefPFAM:PF00436
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000015.1supercontigACJE01000015.1:857025..857877 -
Powered by Drupal