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ASPNIDRAFT_204461-T1, ASPNIDRAFT_204461-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_204461-T1
Unique NameASPNIDRAFT_204461-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000012.1:642417..643650+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_204461-T1 ID=ASPNIDRAFT_204461-T1|Name=ASPNIDRAFT_204461-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1234bp|location=Sequence derived from alignment at ACJE01000012.1:642417..643650+ (Aspergillus niger ATCC 1015)
GTCGCCAGGCGGAACTTTCTCAATACTAACGTCCAGGTTCCTATATAGAC
AGTCGCCATGGGTCGCGTGATCCGCAACCAGAGGAAGGGTCGTGGATCCA
TTTTCAGTGAGTGCGACCGCAGAGATCCTGAAGCGAAATTCGCAGCATCT
CCAGATCAATTTTTACTGATACAATTTTTCGCTCGACAGCGGCAAACACC
CGTCTCAACAAGGCTCCTGCCCAGTTCCGCACCCTCGACTACGCCGAGCG
TCATGGATACACTCGTGGTGTCGTGAAGGAGATCATCCACGACCCCGGCC
GTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGTCACCCCTACAAGTTCAAG
ACCATCACCGAGACCTTCATCGCCAACGAGGGCATGTACACCGGTCAATT
CGTCTACGCCGGAAAGAACGCCGCCCTGACTGTCGGAAACGTCCTTCCCC
TCGCCTCCGTCCCTGAGGGTACCGTTGTGACCAACGTCGAGGAGAAGGCT
GGTGACCGTGGTGCTCTTGGTCGTACCTCCGGTAACTACGTTACCGTCAT
CGGCCACAACCCCGAGGAGGGCAAGACCCGTGTCAAGCTTCCCTCCGGTG
CCAAGAAGGTCGTCAAGAACACCGCCCGTGGTATGATCGGTATCGTCGCT
GGTGGTGGTCGTACCGACAAGCCTTTGCTGAGTATGTCTCCGGAAATCTG
GCTCCGTTGAATCACTCTTCGGAGAGAATACGGTTAAAGAAGAGGACTTT
GATGGCTAACTCATTCCCTACAGAGGCTTCTCGCGCCAAGCACAAGTTCG
CTGTCAAGCGCAACTCTTGGCCCAAGACCCGTGGTGTTGCCATGAACCCC
GTGGATCACGTAAGGCTCCCTTCAATGATTTTGTCGATTTATCTACAGAT
TCTGACATGTTTTCTCTACAGCCTCACGGTGGTGGTAACCACCAGCACAT
TGGTAAGGCCTCGACCATCTCCCGCTACGCTGCCCAGGGTCAAAAAGCCG
GTCTTATCGCTGCCCGGAGAACTGGTCTGCTCCGTGGTACCCAGAAGACC
AAGGAGTAAGCGTGATATTGTGTGGAGTTTTCTTTGTGACGGGTTGAAAA
TGCTCTTTTGCTATGAGGCATATGTACTTAGGCGACTGCGGATAATCTCC
CACGCGTCCTTAGCGAATCTAGGTCGTGGCCACCAAATATTTTCATGATG
ACCAAAGCAAAAGAAATGGGTTCAAAAAATTCAA
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Coding sequence (CDS) from alignment at ACJE01000012.1:642417..643650+

>ASPNIDRAFT_204461-T1 ID=ASPNIDRAFT_204461-T1|Name=ASPNIDRAFT_204461-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=3060bp|location=Sequence derived from alignment at ACJE01000012.1:642417..643650+ (Aspergillus niger ATCC 1015)
ATGGGTCGCGTGATCCGCAACCAGAGGAAGGGTCGTGGATCCATTTTCAC
GGCAAACACCCGTCTCAACAAGGCTCCTGCCCAGTTCCGCACCCTCGACT
ACGCCGAGCGTCATGGATACACTCGTGGTGTCGTGAAGGAGATCATCCAC
GACCCCGGCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGTCACCCCTA
CAAGTTCAAGACCATCACCGAGACCTTCATCGCCAACGAGGGCATGTACA
CCGGTCAATTCGTCTACGCCGGAAAGAACGCCGCCCTGACTGTCGGAAAC
GTCCTTCCCCTCGCCTCCGTCCCTGAGGGTACCGTTGTGACCAACGTCGA
GGAGAAGGCTGGTGACCGTGGTGCTCTTGGTCGTACCTCCGGTAACTACG
TTACCGTCATCGGCCACAACCCCGAGGAGGGCAAGACCCGTGTCAAGCTT
CCCTCCGGTGCCAAGAAGGTCGTCAAGAACACCGCCCGTGGTATGATCGG
TATCGTCGCTGGTGGTGGTCGTACCGACAAGCCTTTGCTGAAGGCTTCTC
GCGCCAAGCACAAGTTCGCTGTCAAGCGCAACTCTTGGCCCAAGACCCGT
GGTGTTGCCATGAACCCCGTGGATCACCCTCACGGTGGTGGTAACCACCA
GCACATTGGTAAGGCCTCGACCATCTCCCGCTACGCTGCCCAGGGTCAAA
AAGCCGGTCTTATCGCTGCCCGGAGAACTGGTCTGCTCCGTGGTACCCAG
AAGACCAAGGAGTAAATGGGTCGCGTGATCCGCAACCAGAGGAAGGGTCG
TGGATCCATTTTCACGGCAAACACCCGTCTCAACAAGGCTCCTGCCCAGT
TCCGCACCCTCGACTACGCCGAGCGTCATGGATACACTCGTGGTGTCGTG
AAGGAGATCATCCACGACCCCGGCCGTGGTGCTCCCCTCGCCAAGGTCCA
GTTCCGTCACCCCTACAAGTTCAAGACCATCACCGAGACCTTCATCGCCA
ACGAGGGCATGTACACCGGTCAATTCGTCTACGCCGGAAAGAACGCCGCC
CTGACTGTCGGAAACGTCCTTCCCCTCGCCTCCGTCCCTGAGGGTACCGT
TGTGACCAACGTCGAGGAGAAGGCTGGTGACCGTGGTGCTCTTGGTCGTA
CCTCCGGTAACTACGTTACCGTCATCGGCCACAACCCCGAGGAGGGCAAG
ACCCGTGTCAAGCTTCCCTCCGGTGCCAAGAAGGTCGTCAAGAACACCGC
CCGTGGTATGATCGGTATCGTCGCTGGTGGTGGTCGTACCGACAAGCCTT
TGCTGAAGGCTTCTCGCGCCAAGCACAAGTTCGCTGTCAAGCGCAACTCT
TGGCCCAAGACCCGTGGTGTTGCCATGAACCCCGTGGATCACCCTCACGG
TGGTGGTAACCACCAGCACATTGGTAAGGCCTCGACCATCTCCCGCTACG
CTGCCCAGGGTCAAAAAGCCGGTCTTATCGCTGCCCGGAGAACTGGTCTG
CTCCGTGGTACCCAGAAGACCAAGGAGTAAATGGGTCGCGTGATCCGCAA
CCAGAGGAAGGGTCGTGGATCCATTTTCACGGCAAACACCCGTCTCAACA
AGGCTCCTGCCCAGTTCCGCACCCTCGACTACGCCGAGCGTCATGGATAC
ACTCGTGGTGTCGTGAAGGAGATCATCCACGACCCCGGCCGTGGTGCTCC
CCTCGCCAAGGTCCAGTTCCGTCACCCCTACAAGTTCAAGACCATCACCG
AGACCTTCATCGCCAACGAGGGCATGTACACCGGTCAATTCGTCTACGCC
GGAAAGAACGCCGCCCTGACTGTCGGAAACGTCCTTCCCCTCGCCTCCGT
CCCTGAGGGTACCGTTGTGACCAACGTCGAGGAGAAGGCTGGTGACCGTG
GTGCTCTTGGTCGTACCTCCGGTAACTACGTTACCGTCATCGGCCACAAC
CCCGAGGAGGGCAAGACCCGTGTCAAGCTTCCCTCCGGTGCCAAGAAGGT
CGTCAAGAACACCGCCCGTGGTATGATCGGTATCGTCGCTGGTGGTGGTC
GTACCGACAAGCCTTTGCTGAAGGCTTCTCGCGCCAAGCACAAGTTCGCT
GTCAAGCGCAACTCTTGGCCCAAGACCCGTGGTGTTGCCATGAACCCCGT
GGATCACCCTCACGGTGGTGGTAACCACCAGCACATTGGTAAGGCCTCGA
CCATCTCCCGCTACGCTGCCCAGGGTCAAAAAGCCGGTCTTATCGCTGCC
CGGAGAACTGGTCTGCTCCGTGGTACCCAGAAGACCAAGGAGTAAATGGG
TCGCGTGATCCGCAACCAGAGGAAGGGTCGTGGATCCATTTTCACGGCAA
ACACCCGTCTCAACAAGGCTCCTGCCCAGTTCCGCACCCTCGACTACGCC
GAGCGTCATGGATACACTCGTGGTGTCGTGAAGGAGATCATCCACGACCC
CGGCCGTGGTGCTCCCCTCGCCAAGGTCCAGTTCCGTCACCCCTACAAGT
TCAAGACCATCACCGAGACCTTCATCGCCAACGAGGGCATGTACACCGGT
CAATTCGTCTACGCCGGAAAGAACGCCGCCCTGACTGTCGGAAACGTCCT
TCCCCTCGCCTCCGTCCCTGAGGGTACCGTTGTGACCAACGTCGAGGAGA
AGGCTGGTGACCGTGGTGCTCTTGGTCGTACCTCCGGTAACTACGTTACC
GTCATCGGCCACAACCCCGAGGAGGGCAAGACCCGTGTCAAGCTTCCCTC
CGGTGCCAAGAAGGTCGTCAAGAACACCGCCCGTGGTATGATCGGTATCG
TCGCTGGTGGTGGTCGTACCGACAAGCCTTTGCTGAAGGCTTCTCGCGCC
AAGCACAAGTTCGCTGTCAAGCGCAACTCTTGGCCCAAGACCCGTGGTGT
TGCCATGAACCCCGTGGATCACCCTCACGGTGGTGGTAACCACCAGCACA
TTGGTAAGGCCTCGACCATCTCCCGCTACGCTGCCCAGGGTCAAAAAGCC
GGTCTTATCGCTGCCCGGAGAACTGGTCTGCTCCGTGGTACCCAGAAGAC
CAAGGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL2ASPNIDRAFT_204461Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204461-T1ASPNIDRAFT_204461-T1-proteinAspergillus niger ATCC 1015polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204461-T1.utr5p1ASPNIDRAFT_204461-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204461-T1.exon1ASPNIDRAFT_204461-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_204461-T1.exon2ASPNIDRAFT_204461-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_204461-T1.exon3ASPNIDRAFT_204461-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_204461-T1.exon4ASPNIDRAFT_204461-T1.exon4Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204461-T1.cdsASPNIDRAFT_204461-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204461-T1.utr3p1ASPNIDRAFT_204461-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR012340
DBxrefInterPro:IPR008991
DBxrefInterPro:IPR022671
DBxrefInterPro:IPR014722
DBxrefInterPro:IPR022666
DBxrefInterPro:IPR014726
DBxrefInterPro:IPR002171
DBxrefInterPro:IPR022669
DBxrefPFAM:PF03947
DBxrefPFAM:PF00181
Product60S ribosomal protein L2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000012.1supercontigACJE01000012.1:642417..643650 +
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