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ASPNIDRAFT_204683-T1, ASPNIDRAFT_204683-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_204683-T1
Unique NameASPNIDRAFT_204683-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000016.1:1665353..1666135-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_204683-T1 ID=ASPNIDRAFT_204683-T1|Name=ASPNIDRAFT_204683-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=783bp|location=Sequence derived from alignment at ACJE01000016.1:1665353..1666135- (Aspergillus niger ATCC 1015)
CTTTCGCGCTGGCATTCTGTCTCCGTTGCTTGTTTTATCACCGCTTTGAA
TAACGAGTCAAGCTTTTTCAGCTTGCTTCGTATCTCCTCCTTCTTCGACT
TTGATCCCTTCGCTAGATTTTCTCACATTCCGCAATGGGCAAGTTGACCA
GCACGATCGGTATCCCGATCAAGCTTCTTAATGAGGCGCAGGTTAGTCTA
TCCTTCATCCTAAGCTATTGCTTGTATCTATGTATTGCGATTAAGCTAAC
GCGGGATTCTGCATAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGG
TTGTCTACCGTGGAAAACTCCTAGAGGGTGCGTTGCTTCACCCCTCCTCA
ACACCTATCCATCCTCTCCAATACACCAATGTCAAATATTCTCGTCACTA
ACATCCTCTGCTATAGCTGAGGACAACATGAACGTCCAACTGAAGGATAT
CACGGTCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACA
TTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGTCG
GTTGCCACCCACCTTAATTTTCTACATATTTATCAGGGATATGGGGCAAT
GCTAACTAGTATGGTTATAGAAACGCTCCCATGTTCCGCTCACGAGGCCA
GCGCGGTCGCGGTGTCGGTCTTGCTCGTGGTAAGGCCACGGTGCAGAGGG
CGAGGGGACAGAGACGGGGTTGATTCGGATGGAATACTAGTGGATAAGTG
GATGGATGCTTCGGTGCGGCGTTTTGTTCTATT
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Coding sequence (CDS) from alignment at ACJE01000016.1:1665353..1666135-

>ASPNIDRAFT_204683-T1 ID=ASPNIDRAFT_204683-T1|Name=ASPNIDRAFT_204683-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1404bp|location=Sequence derived from alignment at ACJE01000016.1:1665353..1666135- (Aspergillus niger ATCC 1015)
AAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTC
TTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGT
TGACTGAGGACAACATGAACGTCCAACTGAAGGATATCACGGTCACCGCG
CGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACATTCGGGGAAGCCA
TGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGGCCACGTCGTCACACT
CGAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGATGGGC
AAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGAGGCGCA
GAAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGT
CTTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGG
TTGACTGAGGACAACATGAACGTCCAACTGAAGGATATCACGGTCACCGC
GCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACATTCGGGGAAGCC
ATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGGCCACGTCGTCACAC
TCGAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGATGGG
CAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGAGGCGC
AGAAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGG
TCTTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGG
GTTGACTGAGGACAACATGAACGTCCAACTGAAGGATATCACGGTCACCG
CGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACATTCGGGGAAGC
CATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGGCCACGTCGTCACA
CTCGAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGATGG
GCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGAGGCG
CAGAAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCG
GTCTTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGG
GGTTGACTGAGGACAACATGAACGTCCAACTGAAGGATATCACGGTCACC
GCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACATTCGGGGAAG
CCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGGCCACGTCGTCAC
ACTCGAGATCACGTCCGGGGTTGTCTACCGTGGAAAACTCCTAGAGGATG
GGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGAGGC
GCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SMD3ASPNIDRAFT_204683Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204683-T1ASPNIDRAFT_204683-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204683-T1.cdsASPNIDRAFT_204683-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204683-T1.utr3p1ASPNIDRAFT_204683-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204683-T1.exon4ASPNIDRAFT_204683-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_204683-T1.exon3ASPNIDRAFT_204683-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_204683-T1.exon2ASPNIDRAFT_204683-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_204683-T1.exon1ASPNIDRAFT_204683-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_204683-T1.utr5p1ASPNIDRAFT_204683-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR034099
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
Productsmall nuclear ribonucleoprotein Sm D3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000016.1supercontigACJE01000016.1:1665353..1666135 -
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