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Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000004.1:3052272..3053087+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_205537-T1 ID=ASPNIDRAFT_205537-T1|Name=ASPNIDRAFT_205537-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=816bp|location=Sequence derived from alignment at ACJE01000004.1:3052272..3053087+ (Aspergillus niger ATCC 1015)
TGACTCCCTCCGCCCCCGTGAAATTCCCGTCGGGCCCAATTTGGCATTTC
TGTCCACACCGGTGTGCCATTTCCAGGGAGCTGCCGGCCAGTCCATTCCA
ATCCCCCTCGTCTGTCCAGCTACTCACACTACTAGCTGGTTCATCTTGCA
TTTCCCCTCCTTCCCCTCATTTTCCTTTACCCGACACCGCATTATCTAAT
CCACATCCTTCCTAATTGGACTAAACCCACCACTCCCACACATAATCTAC
TACTAAGTAACTTCCCCTCCCAACCTAAACACTCCCTCCAGCCAAGCCAT
GTCCGAAAGAGGCTCGTTCCGTGGAGGTGGCCGTGGCCGCGGCGGAGGCT
ATGACCGGTCTGGCGGTCGTGGCGCCCACAGAGGTGGCGGTGCTGGTGGC
GGTGCCCACCAGCAGCAGCAGCAGGAGAAGCCCAAGAAGGAAAACATCCT
CGACCTCAACAAGTATATGGACAAGGAGGTGCGCGTCAAGTTCAATGGCG
GTCGTGAGGGTAAGATCCACCCCTACTGTTGCAATTTACATACACTCCTG
CTGATATTTGTGTCCAGTTATTGGTACGCTCAAGGGATACGACCAACTTA
TGAATCTGGTCCTGGACGATGTCAAGGAATCCATGCGCGGTAAGCACACC
CTGCAATTTCCACACCACGACTTTACTGACGGCCCCAGATGATGAGGGCA
ACGAGAACACTCGCTCTCTGGGTCTCGTCGTGGCCCGTGGCACCATCATC
GTCCTGATCTCGCCCGCCGACGGCAGCGAGGAGATTGCCAACCCCTTCGT
GCAACCCGAAGAGTAA back to topCoding sequence (CDS) from alignment at ACJE01000004.1:3052272..3053087+ >ASPNIDRAFT_205537-T1 ID=ASPNIDRAFT_205537-T1|Name=ASPNIDRAFT_205537-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1233bp|location=Sequence derived from alignment at ACJE01000004.1:3052272..3053087+ (Aspergillus niger ATCC 1015)
ATGTCCGAAAGAGGCTCGTTCCGTGGAGGTGGCCGTGGCCGCGGCGGAGG
CTATGACCGGTCTGGCGGTCGTGGCGCCCACAGAGGTGGCGGTGCTGGTG
GCGGTGCCCACCAGCAGCAGCAGCAGGAGAAGCCCAAGAAGGAAAACATC
CTCGACCTCAACAAGTATATGGACAAGGAGGTGCGCGTCAAGTTCAATGG
CGGTCGTGAGGTTATTGGTACGCTCAAGGGATACGACCAACTTATGAATC
TGGTCCTGGACGATGTCAAGGAATCCATGCGCGATGATGAGGGCAACGAG
AACACTCGCTCTCTGGGTCTCGTCGTGGCCCGTGGCACCATCATCGTCCT
GATCTCGCCCGCCGACGGCAGCGAGGAGATTGCCAACCCCTTCGTGCAAC
CCGAAGAGTAAATGTCCGAAAGAGGCTCGTTCCGTGGAGGTGGCCGTGGC
CGCGGCGGAGGCTATGACCGGTCTGGCGGTCGTGGCGCCCACAGAGGTGG
CGGTGCTGGTGGCGGTGCCCACCAGCAGCAGCAGCAGGAGAAGCCCAAGA
AGGAAAACATCCTCGACCTCAACAAGTATATGGACAAGGAGGTGCGCGTC
AAGTTCAATGGCGGTCGTGAGGTTATTGGTACGCTCAAGGGATACGACCA
ACTTATGAATCTGGTCCTGGACGATGTCAAGGAATCCATGCGCGATGATG
AGGGCAACGAGAACACTCGCTCTCTGGGTCTCGTCGTGGCCCGTGGCACC
ATCATCGTCCTGATCTCGCCCGCCGACGGCAGCGAGGAGATTGCCAACCC
CTTCGTGCAACCCGAAGAGTAAATGTCCGAAAGAGGCTCGTTCCGTGGAG
GTGGCCGTGGCCGCGGCGGAGGCTATGACCGGTCTGGCGGTCGTGGCGCC
CACAGAGGTGGCGGTGCTGGTGGCGGTGCCCACCAGCAGCAGCAGCAGGA
GAAGCCCAAGAAGGAAAACATCCTCGACCTCAACAAGTATATGGACAAGG
AGGTGCGCGTCAAGTTCAATGGCGGTCGTGAGGTTATTGGTACGCTCAAG
GGATACGACCAACTTATGAATCTGGTCCTGGACGATGTCAAGGAATCCAT
GCGCGATGATGAGGGCAACGAGAACACTCGCTCTCTGGGTCTCGTCGTGG
CCCGTGGCACCATCATCGTCCTGATCTCGCCCGCCGACGGCAGCGAGGAG
ATTGCCAACCCCTTCGTGCAACCCGAAGAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000956 | nuclear-transcribed mRNA catabolic process |
| GO:0000398 | mRNA splicing, via spliceosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010920 |
| DBxref | InterPro:IPR017132 |
| DBxref | InterPro:IPR001163 |
| DBxref | PFAM:PF01423 |
| Product | Sm-like protein lsm7 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000004.1 | supercontig | ACJE01000004.1:3052272..3053087 + |
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