You are here

Home

ASPNIDRAFT_205699-T1, ASPNIDRAFT_205699-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_205699-T1
Unique NameASPNIDRAFT_205699-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000004.1:2442743..2443645+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_205699-T1 ID=ASPNIDRAFT_205699-T1|Name=ASPNIDRAFT_205699-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=903bp|location=Sequence derived from alignment at ACJE01000004.1:2442743..2443645+ (Aspergillus niger ATCC 1015)
TCTTGATTGATTCATCCAGATCCAAATCCAATCCAAACTCTACCTTTACA
TCACAATCCAGATACAAACCTCATAACAACCGTCAAAATGTCCTTCGGAA
CCATCTACACCTACCCCAACAACCCCCGGGTCATGAAGGTACTCACCACC
CCTCCCTTCACTCATCACCACCAACTAACCAACCCCTAAACATAGACCCA
AGCGGCTGCCAACTTCAACAACCTCACCCTGACCGTTGCGGACTTCAAAA
TGGGCGAAACCAACCGCGACCCTGTCTTCCTCAGCAAATTCCCCTTGGGC
AAGGTCCCCGCCTTCGAAGGCGCCGACGGCACTTGCCTCGTCGAATCCGA
CGCCATCACACAATATGTGGCCGAGAGCGGTCCCGCGGCAGGTCAATTGG
TCGGCAGCACTCCCGCTGAACGTGCTCTGATCCGTCAATGGATCTGCTTT
GCGGACGGGGAGGTGCTGGGCGCGGTGACTTCGATGGTGCTGTGGCGGAT
CGGGTACAAGGCGTACGATGAGGCGACAGAGAAGAGTGGACTGGAGAAAT
TGACTCGCGCGCTGGGGGCCTTGGAGAACAGGCTTAAGGAGAGGACGTGG
GTGGCAACAGAGAAGTTGAGCTTGGCGGATATTAGTGTTGCCGCGGCGCT
GTATTGGGGGTTCTCGGTGGCCATTGATGCGGAGATGAGGAAGGAGTATC
CTGGTGTGGTGGCTTGGTATGAGCGCGTTATTGAGAGTGAGCATGTCAAG
GAGGCATTTGGTCCTAAGGTCTTCGTGGAGAAGAGGAAGGAGCCTGAGAA
CTAAGGGAAGGAATGGATTGGGGCAGGTCCGCAATCATGACTTATGATTT
GACTTAATTAGGAAATAGCAATGCAAGTTGACTGTGATCAAATGAACTAA
CAA
back to top

Coding sequence (CDS) from alignment at ACJE01000004.1:2442743..2443645+

>ASPNIDRAFT_205699-T1 ID=ASPNIDRAFT_205699-T1|Name=ASPNIDRAFT_205699-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1320bp|location=Sequence derived from alignment at ACJE01000004.1:2442743..2443645+ (Aspergillus niger ATCC 1015)
ATGTCCTTCGGAACCATCTACACCTACCCCAACAACCCCCGGGTCATGAA
GACCCAAGCGGCTGCCAACTTCAACAACCTCACCCTGACCGTTGCGGACT
TCAAAATGGGCGAAACCAACCGCGACCCTGTCTTCCTCAGCAAATTCCCC
TTGGGCAAGGTCCCCGCCTTCGAAGGCGCCGACGGCACTTGCCTCGTCGA
ATCCGACGCCATCACACAATATGTGGCCGAGAGCGGTCCCGCGGCAGGTC
AATTGGTCGGCAGCACTCCCGCTGAACGTGCTCTGATCCGTCAATGGATC
TGCTTTGCGGACGGGGAGGTGCTGGGCGCGGTGACTTCGATGGTGCTGTG
GCGGATCGGGTACAAGGCGTACGATGAGGCGACAGAGAAGAGTGGACTGG
AGAAATTGACTCGCGCGCTGGGGGCCTTGGAGAACAGGCTTAAGGAGAGG
ACGTGGGTGGCAACAGAGAAGTTGAGCTTGGCGGATATTAGTGTTGCCGC
GGCGCTGTATTGGGGGTTCTCGGTGGCCATTGATGCGGAGATGAGGAAGG
AGTATCCTGGTGTGGTGGCTTGGTATGAGCGCGTTATTGAGAGTGAGCAT
GTCAAGGAGGCATTTGGTCCTAAGGTCTTCGTGGAGAAGAGGAAGGAGCC
TGAGAACTAAATGTCCTTCGGAACCATCTACACCTACCCCAACAACCCCC
GGGTCATGAAGACCCAAGCGGCTGCCAACTTCAACAACCTCACCCTGACC
GTTGCGGACTTCAAAATGGGCGAAACCAACCGCGACCCTGTCTTCCTCAG
CAAATTCCCCTTGGGCAAGGTCCCCGCCTTCGAAGGCGCCGACGGCACTT
GCCTCGTCGAATCCGACGCCATCACACAATATGTGGCCGAGAGCGGTCCC
GCGGCAGGTCAATTGGTCGGCAGCACTCCCGCTGAACGTGCTCTGATCCG
TCAATGGATCTGCTTTGCGGACGGGGAGGTGCTGGGCGCGGTGACTTCGA
TGGTGCTGTGGCGGATCGGGTACAAGGCGTACGATGAGGCGACAGAGAAG
AGTGGACTGGAGAAATTGACTCGCGCGCTGGGGGCCTTGGAGAACAGGCT
TAAGGAGAGGACGTGGGTGGCAACAGAGAAGTTGAGCTTGGCGGATATTA
GTGTTGCCGCGGCGCTGTATTGGGGGTTCTCGGTGGCCATTGATGCGGAG
ATGAGGAAGGAGTATCCTGGTGTGGTGGCTTGGTATGAGCGCGTTATTGA
GAGTGAGCATGTCAAGGAGGCATTTGGTCCTAAGGTCTTCGTGGAGAAGA
GGAAGGAGCCTGAGAACTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_205699ASPNIDRAFT_205699Aspergillus niger ATCC 1015gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_205699-T1.utr5p1ASPNIDRAFT_205699-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_205699-T1.exon1ASPNIDRAFT_205699-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_205699-T1.exon2ASPNIDRAFT_205699-T1.exon2Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_205699-T1.cdsASPNIDRAFT_205699-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_205699-T1.utr3p1ASPNIDRAFT_205699-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_205699-T1ASPNIDRAFT_205699-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036249
DBxrefInterPro:IPR036282
DBxrefInterPro:IPR010987
DBxrefInterPro:IPR040079
DBxrefInterPro:IPR004045
DBxrefInterPro:IPR004046
DBxrefPFAM:PF13417
DBxrefPFAM:PF02798
DBxrefPFAM:PF14497
DBxrefPFAM:PF13410
DBxrefPFAM:PF00043
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000004.1supercontigACJE01000004.1:2442743..2443645 +
Powered by Drupal