You are here

Home

ASPNIDRAFT_206025-T1, ASPNIDRAFT_206025-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_206025-T1
Unique NameASPNIDRAFT_206025-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000004.1:1448776..1450059+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_206025-T1 ID=ASPNIDRAFT_206025-T1|Name=ASPNIDRAFT_206025-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1284bp|location=Sequence derived from alignment at ACJE01000004.1:1448776..1450059+ (Aspergillus niger ATCC 1015)
GGGATTGACAGCCAGAATTAAAGGGAAAGGAAATCGCAGGTCGAGAATCT
GAATCTATTACTCATTATCATTGGATGCGTCCGTCAACATGCTTTTGCTA
GACTATCACAACGTTCTCATCCACTCCCTCCTGACGGAGCGGTTCTCTGG
GTACAGCTTCCCCCCCGCCTCCGGTATACGCCAGGCTACCAGCTAACAGC
TCCATTCATGCTTCCTTCAGAACCCCGCCCGTATCAATCGATCAGATCGT
TTCCGACTTTGACGGAGTGACCTTTCATCTGTCTACGCCAGAATCCAAAA
CCAAGATCCTCATCTCCATCAACGTGAAATGCTTCCGGGAGCTTGTCCAG
TACGGCGCCCAGGAGGTGCTGGAAAGGGAATACGGCCCCTACATTGTCAC
CCCAGAGCCCGGCTATGACTTCTCCGTCCTGATCGATCTAGAGAACCTGC
CCGCCGAGCAAGAGGCGAAGGATGAACTCATCATGCGCCTGGCGCTGATG
AAGCGCAACGCCATGGCCGCCCCCTTCGAGAGAGCATTCGATGAATTCGC
CAAGTTAGCCGAAGAGGCTTCGAGATACACAAGCGAGACTGCGCCCCAGG
GAGTTAAGGAGGGAGGAGAGGTTATGGCCATTCACTATCGAGAGGAGGAA
GCGATTTATATCAAGGCCAGCCATGATCGTGTCACGGTGATCTTCAGCAC
AGTGTTCCGGGAGGAGACAGATCGCATCTTTGGCAAGGTGTTCCTGCAGG
AATTCGTCGATGCCAGACGCCGTGTCCTCACCCTGCAAAATGCTCCCCAG
GTACTCTTCCGAAACGACTGTCCTCTGGAGCTGGCCGGTGTGCCTGGCCT
TCAGAACGGTAATGACGGTAGAATCAGCTACGTCACTTTCGGTATGTATT
CGTTGTTATGCATCACCCACCGTTCGCAGTCACTAACCGCTTCTAGTCTT
GTTCCCTCGTCACCTAACCCCCCAGAGACGCTATGAGAACATCTCCCACA
TCCAGATATTCCGTGATTACTTCCATTACCACATCAAAGCATCCAAGGTA
GCTTTATATGTCATAATGCAGGCCAGTTCAATATGCTTACTAAGTCTCCA
GGCATACATCCACACTAGGATGCGCAAGAGGACCGCAGACTTCCTTCAAG
GTAAGAAGCGACCCCTAACAATTGTGGTATGTCCAGTTCACTAATGAATG
ATAGTTCTCAACCGGGCGCGGCCCGAGAACGAGGAGCGAGAAAGGAAGAC
GGCCAGTGGCCGTACTTTCAGGGTTCAGGGATAG
back to top

Coding sequence (CDS) from alignment at ACJE01000004.1:1448776..1450059+

>ASPNIDRAFT_206025-T1 ID=ASPNIDRAFT_206025-T1|Name=ASPNIDRAFT_206025-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=4815bp|location=Sequence derived from alignment at ACJE01000004.1:1448776..1450059+ (Aspergillus niger ATCC 1015)
ATGCTTTTGCTAGACTATCACAACGTTCTCATCCACTCCCTCCTGACGGA
GCGGTTCTCTGGAACCCCGCCCGTATCAATCGATCAGATCGTTTCCGACT
TTGACGGAGTGACCTTTCATCTGTCTACGCCAGAATCCAAAACCAAGATC
CTCATCTCCATCAACGTGAAATGCTTCCGGGAGCTTGTCCAGTACGGCGC
CCAGGAGGTGCTGGAAAGGGAATACGGCCCCTACATTGTCACCCCAGAGC
CCGGCTATGACTTCTCCGTCCTGATCGATCTAGAGAACCTGCCCGCCGAG
CAAGAGGCGAAGGATGAACTCATCATGCGCCTGGCGCTGATGAAGCGCAA
CGCCATGGCCGCCCCCTTCGAGAGAGCATTCGATGAATTCGCCAAGTTAG
CCGAAGAGGCTTCGAGATACACAAGCGAGACTGCGCCCCAGGGAGTTAAG
GAGGGAGGAGAGGTTATGGCCATTCACTATCGAGAGGAGGAAGCGATTTA
TATCAAGGCCAGCCATGATCGTGTCACGGTGATCTTCAGCACAGTGTTCC
GGGAGGAGACAGATCGCATCTTTGGCAAGGTGTTCCTGCAGGAATTCGTC
GATGCCAGACGCCGTGTCCTCACCCTGCAAAATGCTCCCCAGGTACTCTT
CCGAAACGACTGTCCTCTGGAGCTGGCCGGTGTGCCTGGCCTTCAGAACG
GTAATGACGGTAGAATCAGCTACGTCACTTTCGTCTTGTTCCCTCGTCAC
CTAACCCCCCAGAGACGCTATGAGAACATCTCCCACATCCAGATATTCCG
TGATTACTTCCATTACCACATCAAAGCATCCAAGGCATACATCCACACTA
GGATGCGCAAGAGGACCGCAGACTTCCTTCAAGTTCTCAACCGGGCGCGG
CCCGAGAACGAGGAGCGAGAAAGGAAGACGGCCAGTGGCCGTACTTTCAG
GGTTCAGGGATAGATGCTTTTGCTAGACTATCACAACGTTCTCATCCACT
CCCTCCTGACGGAGCGGTTCTCTGGAACCCCGCCCGTATCAATCGATCAG
ATCGTTTCCGACTTTGACGGAGTGACCTTTCATCTGTCTACGCCAGAATC
CAAAACCAAGATCCTCATCTCCATCAACGTGAAATGCTTCCGGGAGCTTG
TCCAGTACGGCGCCCAGGAGGTGCTGGAAAGGGAATACGGCCCCTACATT
GTCACCCCAGAGCCCGGCTATGACTTCTCCGTCCTGATCGATCTAGAGAA
CCTGCCCGCCGAGCAAGAGGCGAAGGATGAACTCATCATGCGCCTGGCGC
TGATGAAGCGCAACGCCATGGCCGCCCCCTTCGAGAGAGCATTCGATGAA
TTCGCCAAGTTAGCCGAAGAGGCTTCGAGATACACAAGCGAGACTGCGCC
CCAGGGAGTTAAGGAGGGAGGAGAGGTTATGGCCATTCACTATCGAGAGG
AGGAAGCGATTTATATCAAGGCCAGCCATGATCGTGTCACGGTGATCTTC
AGCACAGTGTTCCGGGAGGAGACAGATCGCATCTTTGGCAAGGTGTTCCT
GCAGGAATTCGTCGATGCCAGACGCCGTGTCCTCACCCTGCAAAATGCTC
CCCAGGTACTCTTCCGAAACGACTGTCCTCTGGAGCTGGCCGGTGTGCCT
GGCCTTCAGAACGGTAATGACGGTAGAATCAGCTACGTCACTTTCGTCTT
GTTCCCTCGTCACCTAACCCCCCAGAGACGCTATGAGAACATCTCCCACA
TCCAGATATTCCGTGATTACTTCCATTACCACATCAAAGCATCCAAGGCA
TACATCCACACTAGGATGCGCAAGAGGACCGCAGACTTCCTTCAAGTTCT
CAACCGGGCGCGGCCCGAGAACGAGGAGCGAGAAAGGAAGACGGCCAGTG
GCCGTACTTTCAGGGTTCAGGGATAGATGCTTTTGCTAGACTATCACAAC
GTTCTCATCCACTCCCTCCTGACGGAGCGGTTCTCTGGAACCCCGCCCGT
ATCAATCGATCAGATCGTTTCCGACTTTGACGGAGTGACCTTTCATCTGT
CTACGCCAGAATCCAAAACCAAGATCCTCATCTCCATCAACGTGAAATGC
TTCCGGGAGCTTGTCCAGTACGGCGCCCAGGAGGTGCTGGAAAGGGAATA
CGGCCCCTACATTGTCACCCCAGAGCCCGGCTATGACTTCTCCGTCCTGA
TCGATCTAGAGAACCTGCCCGCCGAGCAAGAGGCGAAGGATGAACTCATC
ATGCGCCTGGCGCTGATGAAGCGCAACGCCATGGCCGCCCCCTTCGAGAG
AGCATTCGATGAATTCGCCAAGTTAGCCGAAGAGGCTTCGAGATACACAA
GCGAGACTGCGCCCCAGGGAGTTAAGGAGGGAGGAGAGGTTATGGCCATT
CACTATCGAGAGGAGGAAGCGATTTATATCAAGGCCAGCCATGATCGTGT
CACGGTGATCTTCAGCACAGTGTTCCGGGAGGAGACAGATCGCATCTTTG
GCAAGGTGTTCCTGCAGGAATTCGTCGATGCCAGACGCCGTGTCCTCACC
CTGCAAAATGCTCCCCAGGTACTCTTCCGAAACGACTGTCCTCTGGAGCT
GGCCGGTGTGCCTGGCCTTCAGAACGGTAATGACGGTAGAATCAGCTACG
TCACTTTCGTCTTGTTCCCTCGTCACCTAACCCCCCAGAGACGCTATGAG
AACATCTCCCACATCCAGATATTCCGTGATTACTTCCATTACCACATCAA
AGCATCCAAGGCATACATCCACACTAGGATGCGCAAGAGGACCGCAGACT
TCCTTCAAGTTCTCAACCGGGCGCGGCCCGAGAACGAGGAGCGAGAAAGG
AAGACGGCCAGTGGCCGTACTTTCAGGGTTCAGGGATAGATGCTTTTGCT
AGACTATCACAACGTTCTCATCCACTCCCTCCTGACGGAGCGGTTCTCTG
GAACCCCGCCCGTATCAATCGATCAGATCGTTTCCGACTTTGACGGAGTG
ACCTTTCATCTGTCTACGCCAGAATCCAAAACCAAGATCCTCATCTCCAT
CAACGTGAAATGCTTCCGGGAGCTTGTCCAGTACGGCGCCCAGGAGGTGC
TGGAAAGGGAATACGGCCCCTACATTGTCACCCCAGAGCCCGGCTATGAC
TTCTCCGTCCTGATCGATCTAGAGAACCTGCCCGCCGAGCAAGAGGCGAA
GGATGAACTCATCATGCGCCTGGCGCTGATGAAGCGCAACGCCATGGCCG
CCCCCTTCGAGAGAGCATTCGATGAATTCGCCAAGTTAGCCGAAGAGGCT
TCGAGATACACAAGCGAGACTGCGCCCCAGGGAGTTAAGGAGGGAGGAGA
GGTTATGGCCATTCACTATCGAGAGGAGGAAGCGATTTATATCAAGGCCA
GCCATGATCGTGTCACGGTGATCTTCAGCACAGTGTTCCGGGAGGAGACA
GATCGCATCTTTGGCAAGGTGTTCCTGCAGGAATTCGTCGATGCCAGACG
CCGTGTCCTCACCCTGCAAAATGCTCCCCAGGTACTCTTCCGAAACGACT
GTCCTCTGGAGCTGGCCGGTGTGCCTGGCCTTCAGAACGGTAATGACGGT
AGAATCAGCTACGTCACTTTCGTCTTGTTCCCTCGTCACCTAACCCCCCA
GAGACGCTATGAGAACATCTCCCACATCCAGATATTCCGTGATTACTTCC
ATTACCACATCAAAGCATCCAAGGCATACATCCACACTAGGATGCGCAAG
AGGACCGCAGACTTCCTTCAAGTTCTCAACCGGGCGCGGCCCGAGAACGA
GGAGCGAGAAAGGAAGACGGCCAGTGGCCGTACTTTCAGGGTTCAGGGAT
AGATGCTTTTGCTAGACTATCACAACGTTCTCATCCACTCCCTCCTGACG
GAGCGGTTCTCTGGAACCCCGCCCGTATCAATCGATCAGATCGTTTCCGA
CTTTGACGGAGTGACCTTTCATCTGTCTACGCCAGAATCCAAAACCAAGA
TCCTCATCTCCATCAACGTGAAATGCTTCCGGGAGCTTGTCCAGTACGGC
GCCCAGGAGGTGCTGGAAAGGGAATACGGCCCCTACATTGTCACCCCAGA
GCCCGGCTATGACTTCTCCGTCCTGATCGATCTAGAGAACCTGCCCGCCG
AGCAAGAGGCGAAGGATGAACTCATCATGCGCCTGGCGCTGATGAAGCGC
AACGCCATGGCCGCCCCCTTCGAGAGAGCATTCGATGAATTCGCCAAGTT
AGCCGAAGAGGCTTCGAGATACACAAGCGAGACTGCGCCCCAGGGAGTTA
AGGAGGGAGGAGAGGTTATGGCCATTCACTATCGAGAGGAGGAAGCGATT
TATATCAAGGCCAGCCATGATCGTGTCACGGTGATCTTCAGCACAGTGTT
CCGGGAGGAGACAGATCGCATCTTTGGCAAGGTGTTCCTGCAGGAATTCG
TCGATGCCAGACGCCGTGTCCTCACCCTGCAAAATGCTCCCCAGGTACTC
TTCCGAAACGACTGTCCTCTGGAGCTGGCCGGTGTGCCTGGCCTTCAGAA
CGGTAATGACGGTAGAATCAGCTACGTCACTTTCGTCTTGTTCCCTCGTC
ACCTAACCCCCCAGAGACGCTATGAGAACATCTCCCACATCCAGATATTC
CGTGATTACTTCCATTACCACATCAAAGCATCCAAGGCATACATCCACAC
TAGGATGCGCAAGAGGACCGCAGACTTCCTTCAAGTTCTCAACCGGGCGC
GGCCCGAGAACGAGGAGCGAGAAAGGAAGACGGCCAGTGGCCGTACTTTC
AGGGTTCAGGGATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005885Arp2/3 protein complex
GO:0015629actin cytoskeleton
Vocabulary: Biological Process
TermDefinition
GO:0030041actin filament polymerization
GO:0030833regulation of actin filament polymerization
GO:0034314Arp2/3 complex-mediated actin nucleation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ARC2ASPNIDRAFT_206025Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206025-T1ASPNIDRAFT_206025-T1-proteinAspergillus niger ATCC 1015polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206025-T1.utr5p1ASPNIDRAFT_206025-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206025-T1.exon1ASPNIDRAFT_206025-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_206025-T1.exon2ASPNIDRAFT_206025-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_206025-T1.exon3ASPNIDRAFT_206025-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_206025-T1.exon4ASPNIDRAFT_206025-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_206025-T1.exon5ASPNIDRAFT_206025-T1.exon5Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206025-T1.cdsASPNIDRAFT_206025-T1.cdsAspergillus niger ATCC 1015CDS


Properties
Property NameValue
NoteBUSCO:EOG09263EQZ
DBxrefInterPro:IPR007188
DBxrefInterPro:IPR034666
DBxrefPFAM:PF04045
ProductARP2/3 actin-organizing complex subunit Arc34
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000004.1supercontigACJE01000004.1:1448776..1450059 +
Powered by Drupal