You are here

Home

ASPNIDRAFT_206779-T1, ASPNIDRAFT_206779-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_206779-T1
Unique NameASPNIDRAFT_206779-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000010.1:1320014..1321027-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_206779-T1 ID=ASPNIDRAFT_206779-T1|Name=ASPNIDRAFT_206779-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1014bp|location=Sequence derived from alignment at ACJE01000010.1:1320014..1321027- (Aspergillus niger ATCC 1015)
TTTCTTCCTCTCAGCGACCGGCCCGCAACGCGTCACGCCAAACCACCCAC
CACTTCCATCAATCTTCCATCTCTTTCATCCTTCCATCAATTAATCTCAT
CTCAGCAATATGACTGGACGTAAGTATTTTATCCCCTTTACTTGCTTCGA
CTACGAGTTTCCTCCTCGTTCCCTACTCTCGGGTCGGATGGTGGTGATGA
TCTTGGATGATCTTGATGATGCACCCCTGGCGACACGTGACCGCGTACCT
GTCACGCCCACGCGTCGTGTCCGAGATTTCATCTGATCTTCACCCCACCC
TCACATACTCTCATTGCTTGATGAAACAAAATATCACTCAACATATACTA
ACATTCTCTTACAGGCGGAAAAGGAGGCAAGGGTCTCGGCAAGGGTGGCG
CCAAGCGTCACCGTAAGATCTTGCGTGACAACATCCAGGGTATCACCAAG
CCCGCTATCCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGC
CATGATCTACGAAGAGACTCGTGGTGTTCTCAAGTCCTTCCTCGAGTCCG
TCATCCGTGATGCCGTCACCTACACTGAGCACGCCAAGCGCAAGACCGTC
ACCTCCCTCGACGTTGTCTACGCCCTCAAGCGCCAGGGCCGTACCCTGTA
CGGTTTCGGTGGTTAAATTGCTTTCAACCATTCGAAAGGATCACTGTTTT
GGTGTTTGCCGTCTCTGGTATTGAATCTTCTTCTACTGGCGGTGGAACTA
GACCGACAGGATCCGCCGTGCATTTCGTTTCTGGTTTTTGGGGGTTATTT
CTTTTCTTGACTCGTTATGGTATTGGGGTTTGGGATGACTGGGATTCTCT
TTAATTGGACTGGATTATGTCCACGGGTTTGATACTCTACAATTTCTCTT
ATTTCTTGTTAATGGGGTCTGGATGGATGGATCGGAAATTACTGTATCTA
GACGGCCTTTTCAGGCTTGATGGACGAAATATCACGTGAATGATCGCTGA
TACTTATTCTTCGC
back to top

Coding sequence (CDS) from alignment at ACJE01000010.1:1320014..1321027-

>ASPNIDRAFT_206779-T1 ID=ASPNIDRAFT_206779-T1|Name=ASPNIDRAFT_206779-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=624bp|location=Sequence derived from alignment at ACJE01000010.1:1320014..1321027- (Aspergillus niger ATCC 1015)
GCGGAAAAGGAGGCAAGGGTCTCGGCAAGGGTGGCGCCAAGCGTCACCGT
AAGATCTTGCGTGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCG
TCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGAAG
AGACTCGTGGTGTTCTCAAGTCCTTCCTCGAGTCCGTCATCCGTGATGCC
GTCACCTACACTGAGCACGCCAAGCGCAAGACCGTCACCTCCCTCGACGT
TGTCTACGCCCTCAAGCGCCAGGGCCGTACCCTGTACGGTTTCGGTGGTT
AAATGACTGGACGCGGAAAAGGAGGCAAGGGTCTCGGCAAGGGTGGCGCC
AAGCGTCACCGTAAGATCTTGCGTGACAACATCCAGGGTATCACCAAGCC
CGCTATCCGCCGTCTCGCTCGCCGTGGTGGTGTCAAGCGTATCTCCGCCA
TGATCTACGAAGAGACTCGTGGTGTTCTCAAGTCCTTCCTCGAGTCCGTC
ATCCGTGATGCCGTCACCTACACTGAGCACGCCAAGCGCAAGACCGTCAC
CTCCCTCGACGTTGTCTACGCCCTCAAGCGCCAGGGCCGTACCCTGTACG
GTTTCGGTGGTTAAATGACTGGAC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206779ASPNIDRAFT_206779Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206779-T1ASPNIDRAFT_206779-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206779-T1.cdsASPNIDRAFT_206779-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206779-T1.utr3p1ASPNIDRAFT_206779-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206779-T1.exon2ASPNIDRAFT_206779-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_206779-T1.exon1ASPNIDRAFT_206779-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_206779-T1.utr5p1ASPNIDRAFT_206779-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR019809
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR035425
DBxrefInterPro:IPR001951
DBxrefPFAM:PF02969
DBxrefPFAM:PF15511
DBxrefPFAM:PF00808
Producthistone H4 variant
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000010.1supercontigACJE01000010.1:1320014..1321027 -
Powered by Drupal