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ASPNIDRAFT_207741-T1, ASPNIDRAFT_207741-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_207741-T1
Unique NameASPNIDRAFT_207741-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000021.1:2476830..2478114-

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_207741-T1 ID=ASPNIDRAFT_207741-T1|Name=ASPNIDRAFT_207741-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1285bp|location=Sequence derived from alignment at ACJE01000021.1:2476830..2478114- (Aspergillus niger ATCC 1015)
TCTCGATTTACCTCGTCTGTGAGGTAGTTTTGATCTAGGGATTGTCCCTC
GGGGTTGGCCCATTTCTCTCTGTTCTCATATGATATAACACAGCTTTTAC
CAGAGCTCCTTTGTGCTCTCACAAAGCGAGGCCTTGCCTCAATTTGGCTT
CACTGCCCCCCTTGGCCTTGACCTTCGTTCTACGTCTCTCTCTCTCAGGT
GTGATCTAGGCGCAGCCTTACCACCGCCAACATGTCGCATCTTCAACAGC
AGCTGAAGAGCTTCAACGCTGGTGTTATGGACTATGCAGCCCGAATGCCC
CAGCAGCGTCGTTTCGTGCACAACACCAACTCAGCGAGCAGTTCCCAGCT
CCCCTCCTCTACGTCTACACCTACTCCAAGCGACGATGCGAGACGCAAAC
GGCACGATGCAGATATTGTTTACTCGCAGCCCGCCAACACCGGCACAGGA
AAGGATATCATGACGCAGGTTGTCTTTGCAATCGAGCACATGAAGTCCAA
GGGAGTTCCGCTCAAGTTTGCCGATATCGTCTCGTACCTGTCCCTTCAAC
ATCGGGCCAACGACCAAGGCTATGTTCAGGCACTCCGGAGCATTCTGCAG
ATGCACGAGAAGGTCCAGTACGATCCCAGCGGCGCAAACGGCGAAGGCAC
TTTCAGCTTCCGTCCCCCGCACAACATCCGTACCGCCGAACAGCTCCTCC
AGAAACTCCAGTCCCAGTCGACCGGTGCGGGGATGAGCGTACGTGAACTT
CGGGAGGGTTGGCCAAATGTGGAGGACACGATCAACAAGCTCGAGAAGGA
AGGCAAGCTGCTTGTAACTCGGAACAAGAAGGACGATCATGCCAAGATGG
TTTGGGCCAATGATCCATCCTTGATCCAGCATTTTGATCCTGAGTTCCGT
CAGATCTGGGAGAAGATCAAGGTTCCTGATCAGCAAGCTGTTAAGGAAGA
GCTGGAAAAGGCGGGTATCACACCTACCAACAAGAACAAGGTTGTCAAGG
CCCGGCCAAAGATTGAGAACAAGAAGGTGAAGAAGCCACGACGGAGTGGG
AAGACTACCAATACTCACATGATGGGCGTTTTGAGGGATTATTCGCACCT
CAAACGGTAGTGCTTCGTTGCGCCGCCCCCTGGTTCCGAAAAGTGTGCCA
CCGTCTTTTGGGTGTTTTCTTGGGGCTTACATTGCATTATATTGGCGTTT
GTAGGGGTATTAGACATGGGGTTGTTCTATGGTTACCTGTACAATTATAT
TAGCAAAATCGATACCCGGATAATTAAATGGTTAT
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Coding sequence (CDS) from alignment at ACJE01000021.1:2476830..2478114-

>ASPNIDRAFT_207741-T1 ID=ASPNIDRAFT_207741-T1|Name=ASPNIDRAFT_207741-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=879bp|location=Sequence derived from alignment at ACJE01000021.1:2476830..2478114- (Aspergillus niger ATCC 1015)
ATGTCGCATCTTCAACAGCAGCTGAAGAGCTTCAACGCTGGTGTTATGGA
CTATGCAGCCCGAATGCCCCAGCAGCGTCGTTTCGTGCACAACACCAACT
CAGCGAGCAGTTCCCAGCTCCCCTCCTCTACGTCTACACCTACTCCAAGC
GACGATGCGAGACGCAAACGGCACGATGCAGATATTGTTTACTCGCAGCC
CGCCAACACCGGCACAGGAAAGGATATCATGACGCAGGTTGTCTTTGCAA
TCGAGCACATGAAGTCCAAGGGAGTTCCGCTCAAGTTTGCCGATATCGTC
TCGTACCTGTCCCTTCAACATCGGGCCAACGACCAAGGCTATGTTCAGGC
ACTCCGGAGCATTCTGCAGATGCACGAGAAGGTCCAGTACGATCCCAGCG
GCGCAAACGGCGAAGGCACTTTCAGCTTCCGTCCCCCGCACAACATCCGT
ACCGCCGAACAGCTCCTCCAGAAACTCCAGTCCCAGTCGACCGGTGCGGG
GATGAGCGTACGTGAACTTCGGGAGGGTTGGCCAAATGTGGAGGACACGA
TCAACAAGCTCGAGAAGGAAGGCAAGCTGCTTGTAACTCGGAACAAGAAG
GACGATCATGCCAAGATGGTTTGGGCCAATGATCCATCCTTGATCCAGCA
TTTTGATCCTGAGTTCCGTCAGATCTGGGAGAAGATCAAGGTTCCTGATC
AGCAAGCTGTTAAGGAAGAGCTGGAAAAGGCGGGTATCACACCTACCAAC
AAGAACAAGGTTGTCAAGGCCCGGCCAAAGATTGAGAACAAGAAGGTGAA
GAAGCCACGACGGAGTGGGAAGACTACCAATACTCACATGATGGGCGTTT
TGAGGGATTATTCGCACCTCAAACGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005673transcription factor TFIIE complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_207741ASPNIDRAFT_207741Aspergillus niger ATCC 1015gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_207741-T1.cdsASPNIDRAFT_207741-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_207741-T1.utr3p1ASPNIDRAFT_207741-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_207741-T1.exon1ASPNIDRAFT_207741-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_207741-T1.utr5p1ASPNIDRAFT_207741-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_207741-T1ASPNIDRAFT_207741-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264CND
DBxrefInterPro:IPR040501
DBxrefInterPro:IPR003166
DBxrefInterPro:IPR016656
DBxrefPFAM:PF02186
DBxrefPFAM:PF18121
Product beta subunit
Producttranscription initiation factor TFIIE
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000021.1supercontigACJE01000021.1:2476830..2478114 -
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