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Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000019.1:2594929..2596717- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_209127-T1 ID=ASPNIDRAFT_209127-T1|Name=ASPNIDRAFT_209127-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1789bp|location=Sequence derived from alignment at ACJE01000019.1:2594929..2596717- (Aspergillus niger ATCC 1015)
CATCATCCTGTCCCGCATCCTTCACACCCTCAATTCTTTCCTTCAAGTGA
GGGGAATCTGCATTGCGATAACGTCAGAGACACTGTCAAAGAATAAGAAG
GAAGGGGCCAGAAAGGAAAAAAATAAAAAAAGGAAAAGGAAAAGGGAATA
GAAAAGCTATTATTGCTTTGCTGCTCACACCATCCTTTTTTATTATAAAC
TCCCGTTGAGCCTAGTCTCCTCTTCATCGCCGCCTTCGTTTCCCATCTCT
TTTTTTCCTCCTCGTACTTTTCCTCGCTTTACTTTTTTTTTTCTTCCCTT
CCCTAACCTCCGTTGCGGTCTCAATTCCCCATTAATCACCACCAGCAACA
TTCCAAGAGTTGGAAAACAGTTGCAGGTATAATCCGAGGATAGAGAAAAG
CTCTGCTTCGGGATTCACTTATAATCTTGCACCATCACCCATCAATCAAT
TCGCATCATGTCGGATCCTATCCAGGTTGCCGGGAAGAGAAAGCGTGCCA
GTACGTTCCCCCAATTGCAATTTAAACCCGCGGTTCGCTCTTCAATCCCT
TCTCTGCTTTTCCTGCGTTTCCCTGCTTTCCCTTCCCCCCAAATCTCTCA
GCCTTGCTGTCTCATGTACAGCCGGTGACACCTCGTGCTATTCCCCGCCT
GATTTTTCTTATCGCCAACGCGGGAGATCAACATTCCTTTTTTTTCTCTC
TTCTTTCTTACTTTTTCTTCTTCACGGCTGTCTTTCTTTGTCTCTCGCGA
TCCCATCATCATCCGTTGATGGGTTAATTCCCTGCATCGCTATTCTTTCT
ACGTTGTTTGTTAAAATCACAATCACCGTCTTTTTCTATTCTTGTCTCTG
TGACACGCCCTGTCTGTCGCATCACCCAGTGTCCAGCTCCATCTTAGCCT
CATCATCCTCAACCAACCGCGTGGATCTGTCTTTTTTCTGTTATCGCCAT
TAGAAATGGTTGCTGACTCGGTTGAACCTGCAGGGACGCAATCCTGCCCT
CCCCCCGAATTGCCCCAGCTCGTTGCGGAACAGCACACTCCCATCCCTGC
TCATGACAAAGAGACCCAGCGTCTGATTGTCGTTCTCTCCCATGCCAGCT
TGGAAACCTATCGGGCTTCCAGCGGACGCAATGGTTCCGGTCGTGATGAG
AAGTACTCCCTGCTCAACAGCGATGAACACATTGGTGTCATGCGCAAGAT
GAACCGGGATATCAGCGAGGCTCGCCCGGATATCACACATCAGGTTGGTT
GCTCTGTCTGGGATAGCCAACAACGGCTTGGTGGATGGTTGCTAATGATA
TATGCTTGTTAGTGCCTGCTCACCCTGCTCGACTCCCCCGTGAACAAGGC
GGGTAAGCTGCAGATCTTCATCCACACTGCCAAGGGTGTCTTGATCGAGG
TGAACCCTAGCGTGCGCATTCCTCGTACCTTCAAGCGATTCGCTGGTTTG
ATGGTACAGCTGTTGCACCGCCTCTCCATCCGTTCCACCAACTCCCAGGA
GAAGCTCCTGAAGGTCATCAAGAACCCCATCACCGACCACCTTCCCCCCA
ACTGCCGCAAGGTGACCCTCAGTTTCGAAGCCCCCGTGGTGCGCACCCGC
GACTACATCGAATCGCTAGGCCCCAAGGAGAGCGTCTGTATCTTCGTAGG
TGCCATGGCCAAGGGACACGATGACTTTGCCGACTCCTTCAAGGATGACA
CGATTTCCATCAGTAACTACAGCTTGAGTGCCAGTGTCGCATGCAGCAAG
TTCTGCCATGCCGCCGAGGAGGTGTGGGACATTGTCTGA back to topCoding sequence (CDS) from alignment at ACJE01000019.1:2594929..2596717- >ASPNIDRAFT_209127-T1 ID=ASPNIDRAFT_209127-T1|Name=ASPNIDRAFT_209127-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2340bp|location=Sequence derived from alignment at ACJE01000019.1:2594929..2596717- (Aspergillus niger ATCC 1015)
TGCCTGCTCACCCTGCTCGACTCCCCCGTGAACAAGGCGGGTAAGCTGCA
GATCTTCATCCACACTGCCAAGGGTGTCTTGATCGAGGTGAACCCTAGCG
TGCGCATTCCTCGTACCTTCAAGCGATTCGCTGGTTTGATGGTACAGCTG
TTGCACCGCCTCTCCATCCGTTCCACCAACTCCCAGGAGAAGCTCCTGAA
GGTCATCAAGAACCCCATCACCGACCACCTTCCCCCCAACTGCCGCAAGG
TGACCCTCAGTTTCGAAGCCCCCGTGGTGCGCACCCGCGACTACATCGAA
TCGCTAGGCCCCAAGGAGAGCGTCTGTATCTTCGTAGGTGCCATGGCCAA
GGGACACGATGACTTTGCCGACTCCTTCAAGGATGACACGATTTCCATCA
GTAACTACAGCTTGAGTGCCAGTGTCGCATGCAGCAAGTTCTGCCATGCC
GCCGAGGAGGTGTGGGACATTGTCTGAGGACGCAATCCTGCCCTCCCCCC
GAATTGCCCCAGCTCGTTGCGGAACAGCACACTCCCATCCCTGCTCATGA
CAAAGAGACCCAGCGTCTGATTGTCGTTCTCTCCCATGCCAGCTTGGAAA
CCTATCGGGCTTCCAGCGGACGCAATGGTTCCGGTCGTGATGAGAAGTAC
TCCCTGCTCAACAGCGATGAACACATTGGTGTCATGCGCAAGATGAACCG
GGATATCAGCGAGGCTCGCCCGGATATCACACATCAGATGTCGGATCCTA
TCCAGGTTGCCGGGAAGAGAAAGCGTGCCATGCCTGCTCACCCTGCTCGA
CTCCCCCGTGAACAAGGCGGGTAAGCTGCAGATCTTCATCCACACTGCCA
AGGGTGTCTTGATCGAGGTGAACCCTAGCGTGCGCATTCCTCGTACCTTC
AAGCGATTCGCTGGTTTGATGGTACAGCTGTTGCACCGCCTCTCCATCCG
TTCCACCAACTCCCAGGAGAAGCTCCTGAAGGTCATCAAGAACCCCATCA
CCGACCACCTTCCCCCCAACTGCCGCAAGGTGACCCTCAGTTTCGAAGCC
CCCGTGGTGCGCACCCGCGACTACATCGAATCGCTAGGCCCCAAGGAGAG
CGTCTGTATCTTCGTAGGTGCCATGGCCAAGGGACACGATGACTTTGCCG
ACTCCTTCAAGGATGACACGATTTCCATCAGTAACTACAGCTTGAGTGCC
AGTGTCGCATGCAGCAAGTTCTGCCATGCCGCCGAGGAGGTGTGGGACAT
TGTCTGAGGACGCAATCCTGCCCTCCCCCCGAATTGCCCCAGCTCGTTGC
GGAACAGCACACTCCCATCCCTGCTCATGACAAAGAGACCCAGCGTCTGA
TTGTCGTTCTCTCCCATGCCAGCTTGGAAACCTATCGGGCTTCCAGCGGA
CGCAATGGTTCCGGTCGTGATGAGAAGTACTCCCTGCTCAACAGCGATGA
ACACATTGGTGTCATGCGCAAGATGAACCGGGATATCAGCGAGGCTCGCC
CGGATATCACACATCAGATGTCGGATCCTATCCAGGTTGCCGGGAAGAGA
AAGCGTGCCATGCCTGCTCACCCTGCTCGACTCCCCCGTGAACAAGGCGG
GTAAGCTGCAGATCTTCATCCACACTGCCAAGGGTGTCTTGATCGAGGTG
AACCCTAGCGTGCGCATTCCTCGTACCTTCAAGCGATTCGCTGGTTTGAT
GGTACAGCTGTTGCACCGCCTCTCCATCCGTTCCACCAACTCCCAGGAGA
AGCTCCTGAAGGTCATCAAGAACCCCATCACCGACCACCTTCCCCCCAAC
TGCCGCAAGGTGACCCTCAGTTTCGAAGCCCCCGTGGTGCGCACCCGCGA
CTACATCGAATCGCTAGGCCCCAAGGAGAGCGTCTGTATCTTCGTAGGTG
CCATGGCCAAGGGACACGATGACTTTGCCGACTCCTTCAAGGATGACACG
ATTTCCATCAGTAACTACAGCTTGAGTGCCAGTGTCGCATGCAGCAAGTT
CTGCCATGCCGCCGAGGAGGTGTGGGACATTGTCTGAGGACGCAATCCTG
CCCTCCCCCCGAATTGCCCCAGCTCGTTGCGGAACAGCACACTCCCATCC
CTGCTCATGACAAAGAGACCCAGCGTCTGATTGTCGTTCTCTCCCATGCC
AGCTTGGAAACCTATCGGGCTTCCAGCGGACGCAATGGTTCCGGTCGTGA
TGAGAAGTACTCCCTGCTCAACAGCGATGAACACATTGGTGTCATGCGCA
AGATGAACCGGGATATCAGCGAGGCTCGCCCGGATATCACACATCAGATG
TCGGATCCTATCCAGGTTGCCGGGAAGAGAAAGCGTGCCA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008168 | methyltransferase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263DFA |
| DBxref | InterPro:IPR029028 |
| DBxref | InterPro:IPR029026 |
| DBxref | InterPro:IPR005304 |
| DBxref | PFAM:PF03587 |
| Product | 18S rRNA pseudouridine methyltransferase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000019.1 | supercontig | ACJE01000019.1:2594929..2596717 - |
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