You are here

Home

ASPNIDRAFT_212459-T1, ASPNIDRAFT_212459-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_212459-T1
Unique NameASPNIDRAFT_212459-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000001.1:1315398..1317916+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_212459-T1 ID=ASPNIDRAFT_212459-T1|Name=ASPNIDRAFT_212459-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=2519bp|location=Sequence derived from alignment at ACJE01000001.1:1315398..1317916+ (Aspergillus niger ATCC 1015)
ATGCCAATCAAACGCAAAGCTACGGATAGCGGTCGGTCAAGTAGAGCGTC
GAAACGGCCCACACCTGTGCCGGATATCGGTAGTAGTGATGAATACTCAG
ACTACGAGGAAGAAGTCAAGGATGATAACCTGAAAGGTAGCGTAGAAGTG
GAGTCTCGTTCATATGGGGTCTGCTTGCTGACATCTTCTGCTTGCAAGGT
GTCTTGGAGAAATTCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCCGC
CGTACAGAGACAGGACCCCGATTTCGGTTACAAGGACTTTTCCTCGCTAT
CGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTAAG
GGAACTATTACCTTGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAGGA
CTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCGACCCATCTGCACG
AATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTTTG
CTGCCCCAGGATATCATCAACTTTCTAGATCGATTGTCGAAAACGCCGCT
TCCGGATACCATCAAGTCGTTCATTCTCGACTTCACGAAATCATACGGAA
AGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCGAT
CCGGCGATGTTGCAGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAGCG
ATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGAAAATGGGCG
GCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTTCG
GAGCAGAAGCCGGCGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGACGA
TATTCTGCTGGCTATTCGCGACGACGATGACGACGAGGAGGAAGTTCAAG
TGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGCGC
TGTCAGGCTATGGGCTGTCCAGCATTGGAGGAGTATGATTTCCGAAATGA
TGAGATCAATCCCACCTTGGATATCGACTTGAAGCCGGCAGCACGAATTC
GAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTGCG
AAGAGTGGAATTATCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTGGG
TATTACGGCGGGCTGCACGATCAAGAAGGGGACAATTGTCTTGTGTACCA
GTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCAAT
ATTGATCCCGGTGATATTGCGGTTTTCACCTCAGATAACAAGGAGAAATT
CCGTCGATCGACTGGTATCATCGTGTCAACCTACTCCATGGTGTCCCAGA
CGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGGATTCAGTCA
CGAGAGTGGGGTCTGATGATTCTTGACGAGGTGCACGTCGTGCCTGCATC
GATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAGAGTAAATTGGGAT
TGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGATCTGAACTTC
CTGATTGGTCCCAAGTTGTACGAAGCCAACTGGATGGAACTGGCCGAGCA
AGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTCCGATGACGA
CCGAATTCTACTCGGAGTACATGAGAGAAAAGTCAAGAAAGGCTGCTCTT
CTATACATTATGAACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATCGA
CTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCGACAACGTTT
ACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTATATCTACGGC
GGTACTCCACAGAACGAGCGCATGCGCATTTTGGAGAATTTCCAGCACAA
TGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGAGACACGTCGCTCG
ATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCATTACGGTTCC
CGTCGTCAGGAAGCCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGTCG
AAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGTCGAAAGACA
CAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACCAG
GGCTACGCGTTCAAGGTCATTACTCACCTGCAAGGCATCGAGAACCTGGA
AGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGCTGCAGGAGG
TGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACGAT
CTCTTCTCAGGACGTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGCAG
TGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGACATGGCGTATATCG
AGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATCAC
CCGCTGTTCCGGAAGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAGTT
GGAGGATTTCATGCGGTAG
back to top

Coding sequence (CDS) from alignment at ACJE01000001.1:1315398..1317916+

>ASPNIDRAFT_212459-T1 ID=ASPNIDRAFT_212459-T1|Name=ASPNIDRAFT_212459-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=4956bp|location=Sequence derived from alignment at ACJE01000001.1:1315398..1317916+ (Aspergillus niger ATCC 1015)
ATGCCAATCAAACGCAAAGCTACGGATAGCGGTCGGTCAAGTAGAGCGTC
GAAACGGCCCACACCTGTGCCGGATATCGGTAGTAGTGATGAATACTCAG
ACTACGAGGAAGAAGTCAAGGATGATAACCTGAAAGGTAGCGTAGAAGTG
GAGTCTCGTGTCTTGGAGAAATTCTCTCTCGAATCTTTTAGCAACAAGAA
GAGCGCCGCCGTACAGAGACAGGACCCCGATTTCGGTTACAAGGACTTTT
CCTCGCTATCGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGAT
CCTCTTAAGGGAACTATTACCTTGGAGAGTTTCTCCCCTCTGGCACCCCA
GGCGCAGGACTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCGACCC
ATCTGCACGAATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCG
GTGGGTTTGCTGCCCCAGGATATCATCAACTTTCTAGATCGATTGTCGAA
AACGCCGCTTCCGGATACCATCAAGTCGTTCATTCTCGACTTCACGAAAT
CATACGGAAAGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAA
AGTACCGATCCGGCGATGTTGCAGATGCTGCTGCAGGATGAAGTTATTGG
TTCTCAGCGATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGA
AAATGGGCGGCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGG
CAGGCTTCGGAGCAGAAGCCGGCGGAAGACGGTGCAGGCGAGGCTCGTAA
AGAGGACGATATTCTGCTGGCTATTCGCGACGACGATGACGACGAGGAGG
AAGTTCAAGTGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTC
AAGGCGCGCTGTCAGGCTATGGGCTGTCCAGCATTGGAGGAGTATGATTT
CCGAAATGATGAGATCAATCCCACCTTGGATATCGACTTGAAGCCGGCAG
CACGAATTCGAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAAC
GGACGTGCGAAGAGTGGAATTATCGTCTTGCCTTGTGGTGCCGGAAAAAC
GTTGGTGGGTATTACGGCGGGCTGCACGATCAAGAAGGGGACAATTGTCT
TGTGTACCAGTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGC
TGGTCCAATATTGATCCCGGTGATATTGCGGTTTTCACCTCAGATAACAA
GGAGAAATTCCGTCGATCGACTGGTATCATCGTGTCAACCTACTCCATGG
TGTCCCAGACGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGG
ATTCAGTCACGAGAGTGGGGTCTGATGATTCTTGACGAGGTGCACGTCGT
GCCTGCATCGATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAGAGTA
AATTGGGATTGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGAT
CTGAACTTCCTGATTGGTCCCAAGTTGTACGAAGCCAACTGGATGGAACT
GGCCGAGCAAGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTC
CGATGACGACCGAATTCTACTCGGAGTACATGAGAGAAAAGTCAAGAAAG
GCTGCTCTTCTATACATTATGAACCCTCGGAAATTCCAAGCATGCCAGTT
CCTGATCGACTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCG
ACAACGTTTACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTAT
ATCTACGGCGGTACTCCACAGAACGAGCGCATGCGCATTTTGGAGAATTT
CCAGCACAATGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGAGACA
CGTCGCTCGATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCAT
TACGGTTCCCGTCGTCAGGAAGCCCAACGACTTGGTCGGATTCTGCGAGC
CAAGCGTCGAAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGT
CGAAAGACACAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTT
GTCGACCAGGGCTACGCGTTCAAGGTCATTACTCACCTGCAAGGCATCGA
GAACCTGGAAGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGC
TGCAGGAGGTGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTC
ACGGACGATCTCTTCTCAGGACGTTCGGGCGGCCAGCGAAAGGGAGCAGT
CAAGCGCAGTGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGACATGG
CGTATATCGAGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTG
GGCCATCACCCGCTGTTCCGGAAGCTGGAGCGGGAACGACTCAAGCGGAA
GAAGGAGTTGGAGGATTTCATGCGGTAGATGCCAATCAAACGCAAAGCTA
CGGATAGCGGTCGGTCAAGTAGAGCGTCGAAACGGCCCACACCTGTGCCG
GATATCGGTAGTAGTGATGAATACTCAGACTACGAGGAAGAAGTCAAGGA
TGATAACCTGAAAGGTAGCGTAGAAGTGGAGTCTCGTGTCTTGGAGAAAT
TCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCCGCCGTACAGAGACAG
GACCCCGATTTCGGTTACAAGGACTTTTCCTCGCTATCGTTGAAACCCGA
TCATGCGAACCGCCCGCTCTGGATCGATCCTCTTAAGGGAACTATTACCT
TGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAGGACTTCCTGACTACT
ATCGCCGAACCGCTGTCGCGTCCGACCCATCTGCACGAATACCGATTGAC
AGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTTTGCTGCCCCAGGATA
TCATCAACTTTCTAGATCGATTGTCGAAAACGCCGCTTCCGGATACCATC
AAGTCGTTCATTCTCGACTTCACGAAATCATACGGAAAGATCAAGGTCGT
GCTGAAACATAATCGCTTCTTCGTGGAAAGTACCGATCCGGCGATGTTGC
AGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAGCGATTGAAAGGCACG
GAGGGCATTATTCAGCAGGCAGCCCCGAAAATGGGCGGCCTGGTCATTCC
GGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTTCGGAGCAGAAGCCGG
CGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGACGATATTCTGCTGGCT
ATTCGCGACGACGATGACGACGAGGAGGAAGTTCAAGTGCACAGTTTCGA
AATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGCGCTGTCAGGCTATGG
GCTGTCCAGCATTGGAGGAGTATGATTTCCGAAATGATGAGATCAATCCC
ACCTTGGATATCGACTTGAAGCCGGCAGCACGAATTCGAAGCTACCAAGA
AAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTGCGAAGAGTGGAATTA
TCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTGGGTATTACGGCGGGC
TGCACGATCAAGAAGGGGACAATTGTCTTGTGTACCAGTTCAATGTCTGT
GGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCAATATTGATCCCGGTG
ATATTGCGGTTTTCACCTCAGATAACAAGGAGAAATTCCGTCGATCGACT
GGTATCATCGTGTCAACCTACTCCATGGTGTCCCAGACGCGTGCTCGGTC
GCATGATGCGCAGAAGATGATGGATTGGATTCAGTCACGAGAGTGGGGTC
TGATGATTCTTGACGAGGTGCACGTCGTGCCTGCATCGATGTTCCGAAAG
GTCACATCGGCAATCGCATGTCAGAGTAAATTGGGATTGACGGCAACGCT
GCTGCGAGAGGATGACAAGATCAAGGATCTGAACTTCCTGATTGGTCCCA
AGTTGTACGAAGCCAACTGGATGGAACTGGCCGAGCAAGGGCACATTGCC
AAGGTTCAGTGCGCCGAGGTATGGTGTCCGATGACGACCGAATTCTACTC
GGAGTACATGAGAGAAAAGTCAAGAAAGGCTGCTCTTCTATACATTATGA
ACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATCGACTACCACGAGAAG
CGAGGTGACAAGGTCATTGTCTTTTCCGACAACGTTTACGCTCTTCAGCG
GTATGCACTCAAGCTGAACAAGGCCTATATCTACGGCGGTACTCCACAGA
ACGAGCGCATGCGCATTTTGGAGAATTTCCAGCACAATGAACAAGTCAAT
ACCATCTTCCTCTCCAAGATCGGAGACACGTCGCTCGATCTGCCGGAAGC
CACCTGTCTGATCCAGATCTCGTCGCATTACGGTTCCCGTCGTCAGGAAG
CCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGTCGAAACGACGAGGGA
TTCAACGCCTTCTTCTACTCGCTTGTGTCGAAAGACACAGATGAAATGTT
CTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACCAGGGCTACGCGTTCA
AGGTCATTACTCACCTGCAAGGCATCGAGAACCTGGAAGGGTTGGCGTAC
GCCACGCCCAGCGAACGCCGTGAGCTGCTGCAGGAGGTGATGTTACAGAA
CGAGACTTCTGCCGAGGTAGAGCACGTCACGGACGATCTCTTCTCAGGAC
GTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGCAGTGCCGCGACACTC
AGCGGCCTGGCCGGCGGTGAAGACATGGCGTATATCGAGTACAACAAGAG
CCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATCACCCGCTGTTCCGGA
AGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAGTTGGAGGATTTCATG
CGGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0005524ATP binding
GO:0003678DNA helicase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSL2ASPNIDRAFT_212459Aspergillus niger ATCC 1015gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212459-T1.exon1ASPNIDRAFT_212459-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_212459-T1.exon2ASPNIDRAFT_212459-T1.exon2Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212459-T1.cdsASPNIDRAFT_212459-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212459-T1ASPNIDRAFT_212459-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09260HSP
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR006935
DBxrefInterPro:IPR032438
DBxrefInterPro:IPR001161
DBxrefInterPro:IPR032830
DBxrefInterPro:IPR001650
DBxrefInterPro:IPR014001
DBxrefPFAM:PF04851
DBxrefPFAM:PF13625
DBxrefPFAM:PF00271
DBxrefPFAM:PF16203
ProductDNA repair helicase RAD25
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000001.1supercontigACJE01000001.1:1315398..1317916 +
Powered by Drupal