You are here

Home

ASPNIDRAFT_213213-T1, ASPNIDRAFT_213213-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_213213-T1
Unique NameASPNIDRAFT_213213-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000016.1:488269..490056-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_213213-T1 ID=ASPNIDRAFT_213213-T1|Name=ASPNIDRAFT_213213-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1788bp|location=Sequence derived from alignment at ACJE01000016.1:488269..490056- (Aspergillus niger ATCC 1015)
ATGACAAAGACGGGCAGTCCAACCCTAAGCCCTAGTGCTCGCTACGCACT
GCCGCAACGGCCAACCAAAACCCAGCAAAGTCTATCGCGATTCCATCCGC
ACCGACGCCCCTCGACTCGACAACTCCCAGCAGCAACCTCCGTCGTCGCC
AACCCGCAGTCGTCCCAACCGTCGTGATGGCGCAAGAACGTTCCGGAATC
GTGGTCGGTCTGAACAAGGGCCACGTACGTTGTCCCCTGTCTTGAAGCTT
GTTTTCAGTGTCCCGTTTTGTCTTTGCGCGTGGAAAGATTTGGTCCGGTC
GAGTCGTCGAGATTTCAAGCATGTGAGCGGATTACGGAAAGGCACAACTT
GGATGGGAAGAAATGAGGAAAATGCCGGAAAATTGGGTGGAATTGAAGAA
TTATATGTCGGGAGAAGGGTCTTTTTGTCTGCAATGCGGAGGAAGGATTC
TTTTACAACGGCCCGACGATTCTTGCTTGTTTCATTCGACATGGATGAGA
TTGGGAACCGGGAACTGAAATTGTCCGACTCGGCTGGATCAAATCGGGAC
ATGCTGCTTTGATATCTCCAATCATGGAGAATTTCGCAATTGAAAGACAG
AATGAAAATCAAGGACAACCGGACTAACATGTCTTTGATAACTTGCAGAA
AACCACCCCCCTCAACACCCCCAAGACCCGGATCAGCCGTACCAAGGGCC
AGTCTTCCCGCCGCACGGCCTTCGTTCGTGAGATCGCCCGCGAGGTTGTC
GGTCTTGCCCCCTATGAGCGTCGTATCATCGAACTCCTGAGAAACACTCA
GGACAAGCGCGCTCGTAAGCTCGCCAAGAAGAGAGTACGTTTGCCAGTGC
CTTTACTATTCGGGGGAGGGATATGGTTGGGAGGTTCGATTGTTTGCTTG
TCCGCTTGCTCGCTCGCTCGTTCGGTTGTCTGCTTGGCTCCGGTCCGTTG
TCTATCTGCATCGTGTTCTTCGACATCACTACGATTTCGCTTGATCGATA
AGTACGACCTCATGAGCGTCATGGCCGGTTTATGTCTCAGAGAAGAGAAC
GCAATCATTCGACAATCCATCCATCACCAAACGATCATGAATGCCATCCG
GAGACGACAACTCAAACCAACGAAGCAAGCAAAGTACCAACGACAGAACC
ATCGAGCAACCAAGCAAACAAGCAAGCAATTTGAACCACCGCCACATACC
CCTCAGCTCTTCACAAACCAAAACCACCTGCTAACATATCTTTTTCTCTA
CACAGCTCGGTACCTTCGGCCGTGGCAAGAGAAAGGTCGAGGACATGCAG
CGGGTCATCGCCGAGGCCCGCCGCACTGGTGCTCACTAAACTTTCCATTT
CTCTCTCCAAATATCTCCTGTTTCCAGTTTTCTCTCTCTCCTATTAGCCA
AGAATGAGATAACGAAAACATCCCACACCCAACCTCAAAAAATGAAATGA
AAGTGAAAGTGAGAAACAAAAAACCATGTTTCAATACATTCTTCTCTTCC
TCCGAGTTGTAAAATAGCCCTTTGGGCGCAATGCGTGGGTCGGTTGATCT
ACACAGCCTCCTCATCATTGTTGTTATTTATCCTGGGCTATGGTGTGAAG
GATTGGCTGGTAGGGGCGCTTGACATGATCTACTCCAGCCCCAGGCCCTT
TCATGAGATTCATTGGTTTGTCTTGAGGACTTGGGGAAGTCTGAGATGAT
GGAAATGGTAATAGGCAACAAAGGACTGAAATGAGAAAGGTTTAGAAAAA
AACGGAGTTTGATACAATACCACTGCACTACTGGGATC
back to top

Coding sequence (CDS) from alignment at ACJE01000016.1:488269..490056-

>ASPNIDRAFT_213213-T1 ID=ASPNIDRAFT_213213-T1|Name=ASPNIDRAFT_213213-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=954bp|location=Sequence derived from alignment at ACJE01000016.1:488269..490056- (Aspergillus niger ATCC 1015)
CTCGGTACCTTCGGCCGTGGCAAGAGAAAGGTCGAGGACATGCAGCGGGT
CATCGCCGAGGCCCGCCGCACTGGTGCTCACTAAAAAACCACCCCCCTCA
ACACCCCCAAGACCCGGATCAGCCGTACCAAGGGCCAGTCTTCCCGCCGC
ACGGCCTTCGTTCGTGAGATCGCCCGCGAGGTTGTCGGTCTTGCCCCCTA
TGAGCGTCGTATCATCGAACTCCTGAGAAACACTCAGGACAAGCGCGCTC
GTAAGCTCGCCAAGAAGAGAATGGCGCAAGAACGTTCCGGAATCGTGGTC
GGTCTGAACAAGGGCCACCTCGGTACCTTCGGCCGTGGCAAGAGAAAGGT
CGAGGACATGCAGCGGGTCATCGCCGAGGCCCGCCGCACTGGTGCTCACT
AAAAAACCACCCCCCTCAACACCCCCAAGACCCGGATCAGCCGTACCAAG
GGCCAGTCTTCCCGCCGCACGGCCTTCGTTCGTGAGATCGCCCGCGAGGT
TGTCGGTCTTGCCCCCTATGAGCGTCGTATCATCGAACTCCTGAGAAACA
CTCAGGACAAGCGCGCTCGTAAGCTCGCCAAGAAGAGAATGGCGCAAGAA
CGTTCCGGAATCGTGGTCGGTCTGAACAAGGGCCACCTCGGTACCTTCGG
CCGTGGCAAGAGAAAGGTCGAGGACATGCAGCGGGTCATCGCCGAGGCCC
GCCGCACTGGTGCTCACTAAAAAACCACCCCCCTCAACACCCCCAAGACC
CGGATCAGCCGTACCAAGGGCCAGTCTTCCCGCCGCACGGCCTTCGTTCG
TGAGATCGCCCGCGAGGTTGTCGGTCTTGCCCCCTATGAGCGTCGTATCA
TCGAACTCCTGAGAAACACTCAGGACAAGCGCGCTCGTAAGCTCGCCAAG
AAGAGAATGGCGCAAGAACGTTCCGGAATCGTGGTCGGTCTGAACAAGGG
CCAC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL36ASPNIDRAFT_213213Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_213213-T1ASPNIDRAFT_213213-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_213213-T1.cdsASPNIDRAFT_213213-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_213213-T1.utr3p1ASPNIDRAFT_213213-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_213213-T1.exon3ASPNIDRAFT_213213-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_213213-T1.exon2ASPNIDRAFT_213213-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_213213-T1.exon1ASPNIDRAFT_213213-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_213213-T1.utr5p1ASPNIDRAFT_213213-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR000509
DBxrefInterPro:IPR038097
DBxrefPFAM:PF01158
Product60S ribosomal protein L36
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000016.1supercontigACJE01000016.1:488269..490056 -
Powered by Drupal