You are here

Home

ASPNIDRAFT_214000-T1, ASPNIDRAFT_214000-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_214000-T1
Unique NameASPNIDRAFT_214000-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000012.1:588408..589949-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_214000-T1 ID=ASPNIDRAFT_214000-T1|Name=ASPNIDRAFT_214000-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1542bp|location=Sequence derived from alignment at ACJE01000012.1:588408..589949- (Aspergillus niger ATCC 1015)
ATGCCTCCCCGGAAGCAGTGGATGTAGGTTGCCCCTCCACATTCACCTAC
TCAAATCTATGTACCCAACTAACCCACTCTCAGCGACAAGAAAACCGCAA
CTACCTACCAACTCTTCCACCGTTCCCAACATGACCCTCTCATTCACGAT
CCCTCTGCTGACGACCGCGTCCTGCACCCTGTCTACGGTCCTCCCATCAC
CCCCAGTGAATCTTCCTCCGCCTCCAAGCACCGCGGCCAAAGTCTCGCCG
AGCTGAATCAAACCTTCGGCGATGCCGCGCGCAAAAACGAAGGTGAAGCC
GCCAACTACGGCATTTTCTACGATGACTCGCAATACGACTACATGCAGCA
CTTGCGCGAGCTGGGCACCGGCGCCGGCGACGCTTACTTCGTCGAAGCCA
AGACGAAGGGCAAGGACAAGGGCAAAGGATTGAAGCTGGAGGATGCTTTG
AAACAGGTATCGCTGGATGATGGGCGAAGCGAGTTTGGTGGCACCGAAAG
CGTCTACAGCTATGACATGCGCTCGACGGCGTCTTCCTACGTGCGCAAAC
CCACCTACCAGGACCAGCAGAACGTGCCCGATGCTATTGCGGGTTTCCAG
CCGGATATGGACCCGCGGTTGCGCGAAGCCTTGGAGGCGCTGGAGGACGA
GGAGTACGTGGATGAAGATGACGAGGAGGACGTCTTCGGCCAGTTGACTA
CGCGGGCAGAGGAAATGGACCAGGGTGATTGGGAGGATACCATCTTCGAC
GATGTCGAGGAAGAAGACGATGGATGGGAATCCGATGCGACAGAAAAGGC
CCCCGTGCAGATGGACACCACGGCCGCAAAGGCCCGCTACCAAGCCTCAG
AGCAGGAGGATAAGCCCGGCGAGCTTCCCGAACACAACGAGCCCGCGCCC
GACATGCACCCCGAAGACCAAGGCTGGATGCGCGAATTCGCCAAGTTCAA
GAAGGACGCCAAGTCTGGCAAAACAGCCGGCGTCCCCGCCGGTCCTCCCA
GCGTCGTCCCCTCCCATCAGGGCAGCACCCTCGCCTCGACCGTGTTCACC
GTCGGAGGCACCCCCATCCGCCGCAAGAAGCGCAAGGGCGCCCTCACCAA
CCCCTCCGCCTACTCCATGACTTCGTCCTCCCTCGCCCGTACAGAAGGCC
ACCGTCTCCTCGACGACCGCTTCGAGCGCGTCGAAGCCCTCTACTCCCTC
GACGAGGAGGATGAGTTCGACGACAACATGTCCATGGTCAGTGGAATGAC
CGGTATGACCGGTATGACTGGTGTCTCGGGCATTTCGACTGCCTCGTCTC
AGGCACCGAGTCTCGTTGACGCGAACGGTGATGCCGTTCGTCCTTCCCAC
AACTTCAACAACATCATGGATGATTTCCTTGCTGGGTGGGATGACAAGAC
GAGTTCCCAGGCTAAGCGGAAGGGCGCAAAGGCGAAGCGCGGAAAGAACG
GTAATGAGGCGATTGGCATTCGCATGCTGGATGAGGTTCGGCAGGGATTG
GGCCCTGCTAGGGTTACTGGGAAGGTGTCGGGCAGGGCGTAG
back to top

Coding sequence (CDS) from alignment at ACJE01000012.1:588408..589949-

>ASPNIDRAFT_214000-T1 ID=ASPNIDRAFT_214000-T1|Name=ASPNIDRAFT_214000-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2964bp|location=Sequence derived from alignment at ACJE01000012.1:588408..589949- (Aspergillus niger ATCC 1015)
CGACAAGAAAACCGCAACTACCTACCAACTCTTCCACCGTTCCCAACATG
ACCCTCTCATTCACGATCCCTCTGCTGACGACCGCGTCCTGCACCCTGTC
TACGGTCCTCCCATCACCCCCAGTGAATCTTCCTCCGCCTCCAAGCACCG
CGGCCAAAGTCTCGCCGAGCTGAATCAAACCTTCGGCGATGCCGCGCGCA
AAAACGAAGGTGAAGCCGCCAACTACGGCATTTTCTACGATGACTCGCAA
TACGACTACATGCAGCACTTGCGCGAGCTGGGCACCGGCGCCGGCGACGC
TTACTTCGTCGAAGCCAAGACGAAGGGCAAGGACAAGGGCAAAGGATTGA
AGCTGGAGGATGCTTTGAAACAGGTATCGCTGGATGATGGGCGAAGCGAG
TTTGGTGGCACCGAAAGCGTCTACAGCTATGACATGCGCTCGACGGCGTC
TTCCTACGTGCGCAAACCCACCTACCAGGACCAGCAGAACGTGCCCGATG
CTATTGCGGGTTTCCAGCCGGATATGGACCCGCGGTTGCGCGAAGCCTTG
GAGGCGCTGGAGGACGAGGAGTACGTGGATGAAGATGACGAGGAGGACGT
CTTCGGCCAGTTGACTACGCGGGCAGAGGAAATGGACCAGGGTGATTGGG
AGGATACCATCTTCGACGATGTCGAGGAAGAAGACGATGGATGGGAATCC
GATGCGACAGAAAAGGCCCCCGTGCAGATGGACACCACGGCCGCAAAGGC
CCGCTACCAAGCCTCAGAGCAGGAGGATAAGCCCGGCGAGCTTCCCGAAC
ACAACGAGCCCGCGCCCGACATGCACCCCGAAGACCAAGGCTGGATGCGC
GAATTCGCCAAGTTCAAGAAGGACGCCAAGTCTGGCAAAACAGCCGGCGT
CCCCGCCGGTCCTCCCAGCGTCGTCCCCTCCCATCAGGGCAGCACCCTCG
CCTCGACCGTGTTCACCGTCGGAGGCACCCCCATCCGCCGCAAGAAGCGC
AAGGGCGCCCTCACCAACCCCTCCGCCTACTCCATGACTTCGTCCTCCCT
CGCCCGTACAGAAGGCCACCGTCTCCTCGACGACCGCTTCGAGCGCGTCG
AAGCCCTCTACTCCCTCGACGAGGAGGATGAGTTCGACGACAACATGTCC
ATGGTCAGTGGAATGACCGGTATGACCGGTATGACTGGTGTCTCGGGCAT
TTCGACTGCCTCGTCTCAGGCACCGAGTCTCGTTGACGCGAACGGTGATG
CCGTTCGTCCTTCCCACAACTTCAACAACATCATGGATGATTTCCTTGCT
GGGTGGGATGACAAGACGAGTTCCCAGGCTAAGCGGAAGGGCGCAAAGGC
GAAGCGCGGAAAGAACGGTAATGAGGCGATTGGCATTCGCATGCTGGATG
AGGTTCGGCAGGGATTGGGCCCTGCTAGGGTTACTGGGAAGGTGTCGGGC
AGGGCGTAGATGCCTCCCCGGAAGCAGTGGATCGACAAGAAAACCGCAAC
TACCTACCAACTCTTCCACCGTTCCCAACATGACCCTCTCATTCACGATC
CCTCTGCTGACGACCGCGTCCTGCACCCTGTCTACGGTCCTCCCATCACC
CCCAGTGAATCTTCCTCCGCCTCCAAGCACCGCGGCCAAAGTCTCGCCGA
GCTGAATCAAACCTTCGGCGATGCCGCGCGCAAAAACGAAGGTGAAGCCG
CCAACTACGGCATTTTCTACGATGACTCGCAATACGACTACATGCAGCAC
TTGCGCGAGCTGGGCACCGGCGCCGGCGACGCTTACTTCGTCGAAGCCAA
GACGAAGGGCAAGGACAAGGGCAAAGGATTGAAGCTGGAGGATGCTTTGA
AACAGGTATCGCTGGATGATGGGCGAAGCGAGTTTGGTGGCACCGAAAGC
GTCTACAGCTATGACATGCGCTCGACGGCGTCTTCCTACGTGCGCAAACC
CACCTACCAGGACCAGCAGAACGTGCCCGATGCTATTGCGGGTTTCCAGC
CGGATATGGACCCGCGGTTGCGCGAAGCCTTGGAGGCGCTGGAGGACGAG
GAGTACGTGGATGAAGATGACGAGGAGGACGTCTTCGGCCAGTTGACTAC
GCGGGCAGAGGAAATGGACCAGGGTGATTGGGAGGATACCATCTTCGACG
ATGTCGAGGAAGAAGACGATGGATGGGAATCCGATGCGACAGAAAAGGCC
CCCGTGCAGATGGACACCACGGCCGCAAAGGCCCGCTACCAAGCCTCAGA
GCAGGAGGATAAGCCCGGCGAGCTTCCCGAACACAACGAGCCCGCGCCCG
ACATGCACCCCGAAGACCAAGGCTGGATGCGCGAATTCGCCAAGTTCAAG
AAGGACGCCAAGTCTGGCAAAACAGCCGGCGTCCCCGCCGGTCCTCCCAG
CGTCGTCCCCTCCCATCAGGGCAGCACCCTCGCCTCGACCGTGTTCACCG
TCGGAGGCACCCCCATCCGCCGCAAGAAGCGCAAGGGCGCCCTCACCAAC
CCCTCCGCCTACTCCATGACTTCGTCCTCCCTCGCCCGTACAGAAGGCCA
CCGTCTCCTCGACGACCGCTTCGAGCGCGTCGAAGCCCTCTACTCCCTCG
ACGAGGAGGATGAGTTCGACGACAACATGTCCATGGTCAGTGGAATGACC
GGTATGACCGGTATGACTGGTGTCTCGGGCATTTCGACTGCCTCGTCTCA
GGCACCGAGTCTCGTTGACGCGAACGGTGATGCCGTTCGTCCTTCCCACA
ACTTCAACAACATCATGGATGATTTCCTTGCTGGGTGGGATGACAAGACG
AGTTCCCAGGCTAAGCGGAAGGGCGCAAAGGCGAAGCGCGGAAAGAACGG
TAATGAGGCGATTGGCATTCGCATGCTGGATGAGGTTCGGCAGGGATTGG
GCCCTGCTAGGGTTACTGGGAAGGTGTCGGGCAGGGCGTAGATGCCTCCC
CGGAAGCAGTGGAT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042274ribosomal small subunit biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_214000ASPNIDRAFT_214000Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_214000-T1ASPNIDRAFT_214000-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_214000-T1.cdsASPNIDRAFT_214000-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_214000-T1.exon2ASPNIDRAFT_214000-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_214000-T1.exon1ASPNIDRAFT_214000-T1.exon1Aspergillus niger ATCC 1015exon


Properties
Property NameValue
NoteBUSCO:EOG09262VVF
DBxrefInterPro:IPR007307
DBxrefPFAM:PF04180
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000012.1supercontigACJE01000012.1:588408..589949 -
Powered by Drupal