You are here

ASPNIDRAFT_40350-T1, ASPNIDRAFT_40350-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_40350-T1
Unique NameASPNIDRAFT_40350-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000008.1:202201..202832+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_40350-T1 ID=ASPNIDRAFT_40350-T1|Name=ASPNIDRAFT_40350-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=632bp|location=Sequence derived from alignment at ACJE01000008.1:202201..202832+ (Aspergillus niger ATCC 1015)
ATGCCTCCCAAGACAGGCGGTCGCGGTCGCAAGAGCATTGTGGCGGCGCC GCGACAATCAACAGCTGGCGACCGTGCTGCCGCAAGCTCGTCGAAAGCAG CTGCAACGACGTCGCCGGCAGCTAAAAAAGTGCGCAAATCCACTGGACCG GCTAGGGGAGGGAAAAGGCCTGCTGGAAAGGCACCCAGAGAGTCCGACGT TCAGCGTGCGTACCCCCACCTTCAATCCAAAATCCTCTCTGCGCTCTCTC TCTCTCCTGAAGAATGAAAATTGACATCCTCGCAGCTGGTGATCCCACAC CACAAGGACGTGTACGCCGCTACAAGCCTGGAACCGTGGCTCTCAAAGAG ATCCGCAAGTACCAGCGCTCTTATGATCTGCTTATCCAAAAGCTTCCTTT TGCTCGGCTGGTCCGCGAGGTCGCTCTTGACCTCCTCCCTTCAGAAGTTG GCGCCGAGCTGCGGTGGCAGTCGCATGCGATCCAAGCGCTCCAAGAAGCA GCCGAAGCTTTCCTTGTACATCTCTTCGAGGACACCAACCTCTGTGCTAT TCACGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGAC GCATTCGTGGTGTCTGGGGTGGTTTGGGCTAA
back to top

Coding sequence (CDS) from alignment at ACJE01000008.1:202201..202832+

>ASPNIDRAFT_40350-T1 ID=ASPNIDRAFT_40350-T1|Name=ASPNIDRAFT_40350-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1104bp|location=Sequence derived from alignment at ACJE01000008.1:202201..202832+ (Aspergillus niger ATCC 1015)
ATGCCTCCCAAGACAGGCGGTCGCGGTCGCAAGAGCATTGTGGCGGCGCC
GCGACAATCAACAGCTGGCGACCGTGCTGCCGCAAGCTCGTCGAAAGCAG
CTGCAACGACGTCGCCGGCAGCTAAAAAAGTGCGCAAATCCACTGGACCG
GCTAGGGGAGGGAAAAGGCCTGCTGGAAAGGCACCCAGAGAGTCCGACGT
TCAGCCTGGTGATCCCACACCACAAGGACGTGTACGCCGCTACAAGCCTG
GAACCGTGGCTCTCAAAGAGATCCGCAAGTACCAGCGCTCTTATGATCTG
CTTATCCAAAAGCTTCCTTTTGCTCGGCTGGTCCGCGAGGTCGCTCTTGA
CCTCCTCCCTTCAGAAGTTGGCGCCGAGCTGCGGTGGCAGTCGCATGCGA
TCCAAGCGCTCCAAGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCGAG
GACACCAACCTCTGTGCTATTCACGCCAAGCGCGTGACCATCATGCAGAA
AGATATCCAACTTGCTCGACGCATTCGTGGTGTCTGGGGTGGTTTGGGCT
AAATGCCTCCCAAGACAGGCGGTCGCGGTCGCAAGAGCATTGTGGCGGCG
CCGCGACAATCAACAGCTGGCGACCGTGCTGCCGCAAGCTCGTCGAAAGC
AGCTGCAACGACGTCGCCGGCAGCTAAAAAAGTGCGCAAATCCACTGGAC
CGGCTAGGGGAGGGAAAAGGCCTGCTGGAAAGGCACCCAGAGAGTCCGAC
GTTCAGCCTGGTGATCCCACACCACAAGGACGTGTACGCCGCTACAAGCC
TGGAACCGTGGCTCTCAAAGAGATCCGCAAGTACCAGCGCTCTTATGATC
TGCTTATCCAAAAGCTTCCTTTTGCTCGGCTGGTCCGCGAGGTCGCTCTT
GACCTCCTCCCTTCAGAAGTTGGCGCCGAGCTGCGGTGGCAGTCGCATGC
GATCCAAGCGCTCCAAGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCG
AGGACACCAACCTCTGTGCTATTCACGCCAAGCGCGTGACCATCATGCAG
AAAGATATCCAACTTGCTCGACGCATTCGTGGTGTCTGGGGTGGTTTGGG
CTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
HH3VASPNIDRAFT_40350Aspergillus niger ATCC 1015gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_40350-T1.exon1ASPNIDRAFT_40350-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_40350-T1.exon2ASPNIDRAFT_40350-T1.exon2Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_40350-T1.cdsASPNIDRAFT_40350-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_40350-T1ASPNIDRAFT_40350-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR007125
DBxrefInterPro:IPR000164
DBxrefPFAM:PF00125
ProductHistone H3-like centromeric protein hH3v
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000008.1supercontigACJE01000008.1:202201..202832 +