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Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000006.1:333787..335289- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_42476-T1 ID=ASPNIDRAFT_42476-T1|Name=ASPNIDRAFT_42476-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1503bp|location=Sequence derived from alignment at ACJE01000006.1:333787..335289- (Aspergillus niger ATCC 1015)
ATGGATCTCGCAAACACCCTTATTCGCAGCGTCGTGCGCGCCTTCTACGA
GACCCGCCACATCCTCGTAGTAGATGCGCTCTTCATCCACTCCGTGTACG
TCCCGCACCAATATCATCGCATCGCAACAGACACTCCATACTAACCAGAT
GATTCTATAGTCTGCACGCAGAAGATCTCGCATTTCTTCTAGGCATGCAA
CAAAAAGACTTACGGAAACTCTGCGCCAAGTTGCGCGAAGATCGGCTCAT
CTCCGTGTAAGCTACATCTACACCTACACCAGTGTCACCACGAAGGAACC
ACCCTCACTAACATCCAACCCAAAAAAAACAGGAGCACGCGCGCTGAAAT
TCGCGATGGCTCAACACGTCCCGTTAACCGCGAATACTACTACATCCCAC
TGCACCCCGTCGTCGACGCGATCAAATACAAAGTCTCGAAACTCACCTCC
ACAATAAAAGCACAATACACACCAAGCCAAGAGCGCAAAGAATACATCTG
CCTCCGCTGCGGCTCCGAATGGACCGAACTCGACGTCCTCAGTCTCTACA
GCGAAGAAGGCTTCGAATGCCAAAACTGCGGGGCGATCCTCGAACGCACC
GAGGACGTCAAAGGCGCCGAAGGCATAGACAGAACCGGACATGAGAAAAA
CAGCAAACTAATGAACCAACTGGACACGATGCTCAAACTCCTCAAACAAA
TCGACTCCGTCGAAATCCCCCCCAACGACTTCGACACGGCCTGGGACCAT
AAAATCGACGTCGTCCGGAACCAGCAAACCCACCCCACACGAGCGGCAGT
CATCGTGCCCTCGAAGCAACAACAAGAAGCCGTGCGCGGCAACACCAAGA
CCGACGCCACCGCTCTCGAAATTTCCCTCACCTCTAGCGAAGAGAAATCC
GCCGCCGAACAAGCCGCCGAAGCGGCGCGCAAAGCGGCAGTCGAGAAACA
GAATGCCCTGCCAGTCTGGCACACCCACTCCACGGTGTCCACGTCCGCGG
GCAACGGGCCGCATGTTAAATCTGAGACAGACATCGACATCAAACCGGAG
ATCAAGCCCGAAGACGAAGACCGGAAACCGGAAATCAACGGTCTGGATGA
CAAGGTCGCGGCTTACTATGCTGAAATGGAGCGTGAGAAGGCCCTCCAGG
CGCAAGAAGATGCAAGCAGTGCAGAGGAAGATTCGGATGAGTTTGATGAG
TTCGAGGATGTGGGTGTGTCAGCTAGTGATGCGGCTGCTTCTCCTGCTGT
CAATGCTACGCCTACGCCTGGCGGGGGCCCTACTAGTGCGCCGATGCAGC
AGACTTCGACTACGTCTTCGGTTGGTATCAAGCGGGAGTTAGATACGGAT
TACTCGAGCGTCAGTACATCTCAGACGGCAGCGGCGACGCCAGCTACGGG
CGGAGAGGAAGGGCCGACGGCGAAGAAGATCAAGACTGAACCGGAGGTTA
AGAAAGAAGAAGAGTCCGACGAGGACGATGATGAGGAGTTTGAAGATGTG
TAG back to topCoding sequence (CDS) from alignment at ACJE01000006.1:333787..335289- >ASPNIDRAFT_42476-T1 ID=ASPNIDRAFT_42476-T1|Name=ASPNIDRAFT_42476-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=4086bp|location=Sequence derived from alignment at ACJE01000006.1:333787..335289- (Aspergillus niger ATCC 1015)
GAGCACGCGCGCTGAAATTCGCGATGGCTCAACACGTCCCGTTAACCGCG
AATACTACTACATCCCACTGCACCCCGTCGTCGACGCGATCAAATACAAA
GTCTCGAAACTCACCTCCACAATAAAAGCACAATACACACCAAGCCAAGA
GCGCAAAGAATACATCTGCCTCCGCTGCGGCTCCGAATGGACCGAACTCG
ACGTCCTCAGTCTCTACAGCGAAGAAGGCTTCGAATGCCAAAACTGCGGG
GCGATCCTCGAACGCACCGAGGACGTCAAAGGCGCCGAAGGCATAGACAG
AACCGGACATGAGAAAAACAGCAAACTAATGAACCAACTGGACACGATGC
TCAAACTCCTCAAACAAATCGACTCCGTCGAAATCCCCCCCAACGACTTC
GACACGGCCTGGGACCATAAAATCGACGTCGTCCGGAACCAGCAAACCCA
CCCCACACGAGCGGCAGTCATCGTGCCCTCGAAGCAACAACAAGAAGCCG
TGCGCGGCAACACCAAGACCGACGCCACCGCTCTCGAAATTTCCCTCACC
TCTAGCGAAGAGAAATCCGCCGCCGAACAAGCCGCCGAAGCGGCGCGCAA
AGCGGCAGTCGAGAAACAGAATGCCCTGCCAGTCTGGCACACCCACTCCA
CGGTGTCCACGTCCGCGGGCAACGGGCCGCATGTTAAATCTGAGACAGAC
ATCGACATCAAACCGGAGATCAAGCCCGAAGACGAAGACCGGAAACCGGA
AATCAACGGTCTGGATGACAAGGTCGCGGCTTACTATGCTGAAATGGAGC
GTGAGAAGGCCCTCCAGGCGCAAGAAGATGCAAGCAGTGCAGAGGAAGAT
TCGGATGAGTTTGATGAGTTCGAGGATGTGGGTGTGTCAGCTAGTGATGC
GGCTGCTTCTCCTGCTGTCAATGCTACGCCTACGCCTGGCGGGGGCCCTA
CTAGTGCGCCGATGCAGCAGACTTCGACTACGTCTTCGGTTGGTATCAAG
CGGGAGTTAGATACGGATTACTCGAGCGTCAGTACATCTCAGACGGCAGC
GGCGACGCCAGCTACGGGCGGAGAGGAAGGGCCGACGGCGAAGAAGATCA
AGACTGAACCGGAGGTTAAGAAAGAAGAAGAGTCCGACGAGGACGATGAT
GAGGAGTTTGAAGATGTGTAGTCTGCACGCAGAAGATCTCGCATTTCTTC
TAGGCATGCAACAAAAAGACTTACGGAAACTCTGCGCCAAGTTGCGCGAA
GATCGGCTCATCTCCGTATGGATCTCGCAAACACCCTTATTCGCAGCGTC
GTGCGCGCCTTCTACGAGACCCGCCACATCCTCGTAGTAGATGCGCTCTT
CATCCACTCCGTGAGCACGCGCGCTGAAATTCGCGATGGCTCAACACGTC
CCGTTAACCGCGAATACTACTACATCCCACTGCACCCCGTCGTCGACGCG
ATCAAATACAAAGTCTCGAAACTCACCTCCACAATAAAAGCACAATACAC
ACCAAGCCAAGAGCGCAAAGAATACATCTGCCTCCGCTGCGGCTCCGAAT
GGACCGAACTCGACGTCCTCAGTCTCTACAGCGAAGAAGGCTTCGAATGC
CAAAACTGCGGGGCGATCCTCGAACGCACCGAGGACGTCAAAGGCGCCGA
AGGCATAGACAGAACCGGACATGAGAAAAACAGCAAACTAATGAACCAAC
TGGACACGATGCTCAAACTCCTCAAACAAATCGACTCCGTCGAAATCCCC
CCCAACGACTTCGACACGGCCTGGGACCATAAAATCGACGTCGTCCGGAA
CCAGCAAACCCACCCCACACGAGCGGCAGTCATCGTGCCCTCGAAGCAAC
AACAAGAAGCCGTGCGCGGCAACACCAAGACCGACGCCACCGCTCTCGAA
ATTTCCCTCACCTCTAGCGAAGAGAAATCCGCCGCCGAACAAGCCGCCGA
AGCGGCGCGCAAAGCGGCAGTCGAGAAACAGAATGCCCTGCCAGTCTGGC
ACACCCACTCCACGGTGTCCACGTCCGCGGGCAACGGGCCGCATGTTAAA
TCTGAGACAGACATCGACATCAAACCGGAGATCAAGCCCGAAGACGAAGA
CCGGAAACCGGAAATCAACGGTCTGGATGACAAGGTCGCGGCTTACTATG
CTGAAATGGAGCGTGAGAAGGCCCTCCAGGCGCAAGAAGATGCAAGCAGT
GCAGAGGAAGATTCGGATGAGTTTGATGAGTTCGAGGATGTGGGTGTGTC
AGCTAGTGATGCGGCTGCTTCTCCTGCTGTCAATGCTACGCCTACGCCTG
GCGGGGGCCCTACTAGTGCGCCGATGCAGCAGACTTCGACTACGTCTTCG
GTTGGTATCAAGCGGGAGTTAGATACGGATTACTCGAGCGTCAGTACATC
TCAGACGGCAGCGGCGACGCCAGCTACGGGCGGAGAGGAAGGGCCGACGG
CGAAGAAGATCAAGACTGAACCGGAGGTTAAGAAAGAAGAAGAGTCCGAC
GAGGACGATGATGAGGAGTTTGAAGATGTGTAGTCTGCACGCAGAAGATC
TCGCATTTCTTCTAGGCATGCAACAAAAAGACTTACGGAAACTCTGCGCC
AAGTTGCGCGAAGATCGGCTCATCTCCGTATGGATCTCGCAAACACCCTT
ATTCGCAGCGTCGTGCGCGCCTTCTACGAGACCCGCCACATCCTCGTAGT
AGATGCGCTCTTCATCCACTCCGTGAGCACGCGCGCTGAAATTCGCGATG
GCTCAACACGTCCCGTTAACCGCGAATACTACTACATCCCACTGCACCCC
GTCGTCGACGCGATCAAATACAAAGTCTCGAAACTCACCTCCACAATAAA
AGCACAATACACACCAAGCCAAGAGCGCAAAGAATACATCTGCCTCCGCT
GCGGCTCCGAATGGACCGAACTCGACGTCCTCAGTCTCTACAGCGAAGAA
GGCTTCGAATGCCAAAACTGCGGGGCGATCCTCGAACGCACCGAGGACGT
CAAAGGCGCCGAAGGCATAGACAGAACCGGACATGAGAAAAACAGCAAAC
TAATGAACCAACTGGACACGATGCTCAAACTCCTCAAACAAATCGACTCC
GTCGAAATCCCCCCCAACGACTTCGACACGGCCTGGGACCATAAAATCGA
CGTCGTCCGGAACCAGCAAACCCACCCCACACGAGCGGCAGTCATCGTGC
CCTCGAAGCAACAACAAGAAGCCGTGCGCGGCAACACCAAGACCGACGCC
ACCGCTCTCGAAATTTCCCTCACCTCTAGCGAAGAGAAATCCGCCGCCGA
ACAAGCCGCCGAAGCGGCGCGCAAAGCGGCAGTCGAGAAACAGAATGCCC
TGCCAGTCTGGCACACCCACTCCACGGTGTCCACGTCCGCGGGCAACGGG
CCGCATGTTAAATCTGAGACAGACATCGACATCAAACCGGAGATCAAGCC
CGAAGACGAAGACCGGAAACCGGAAATCAACGGTCTGGATGACAAGGTCG
CGGCTTACTATGCTGAAATGGAGCGTGAGAAGGCCCTCCAGGCGCAAGAA
GATGCAAGCAGTGCAGAGGAAGATTCGGATGAGTTTGATGAGTTCGAGGA
TGTGGGTGTGTCAGCTAGTGATGCGGCTGCTTCTCCTGCTGTCAATGCTA
CGCCTACGCCTGGCGGGGGCCCTACTAGTGCGCCGATGCAGCAGACTTCG
ACTACGTCTTCGGTTGGTATCAAGCGGGAGTTAGATACGGATTACTCGAG
CGTCAGTACATCTCAGACGGCAGCGGCGACGCCAGCTACGGGCGGAGAGG
AAGGGCCGACGGCGAAGAAGATCAAGACTGAACCGGAGGTTAAGAAAGAA
GAAGAGTCCGACGAGGACGATGATGAGGAGTTTGAAGATGTGTAGTCTGC
ACGCAGAAGATCTCGCATTTCTTCTAGGCATGCAACAAAAAGACTTACGG
AAACTCTGCGCCAAGTTGCGCGAAGATCGGCTCATCTCCGTATGGATCTC
GCAAACACCCTTATTCGCAGCGTCGTGCGCGCCTTCTACGAGACCCGCCA
CATCCTCGTAGTAGATGCGCTCTTCATCCACTCCGT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR017919 |
| DBxref | InterPro:IPR024550 |
| DBxref | InterPro:IPR002853 |
| DBxref | PFAM:PF02002 |
| Product | alpha subunit |
| Product | transcription initiation factor TFIIE |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000006.1 | supercontig | ACJE01000006.1:333787..335289 - |
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