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ASPNIDRAFT_42792-T1, ASPNIDRAFT_42792-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_42792-T1
Unique NameASPNIDRAFT_42792-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000020.1:731537..732768+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_42792-T1 ID=ASPNIDRAFT_42792-T1|Name=ASPNIDRAFT_42792-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1232bp|location=Sequence derived from alignment at ACJE01000020.1:731537..732768+ (Aspergillus niger ATCC 1015)
ATGAATACCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGGTAC
GTCCACCAACCACATACATCCATCACCATCTCATCCCCCTCCCAAATCCA
ACTTCTACCCTACAAACTAACAAGACGAAATATAGACCGGCCCCCCTCCC
TCCTAACCATCATCCTCGACACCAATCCGCACGCCTGGGCACTCCTCAAC
CCCTCCCTCCCCCTCTCCACCGCCATCGCCAACATCCTCGTCTTCATCAA
CGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGTGGTATCCTCAC
ACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAGCCGCCACCACC
ACCACCGCCGCCAATAACCTAGACTCCGACGGCGACATCTCCATGCGCTC
CCAACAACCACCACCATCTACTCACACCAACGTAAACAAATACCGCCCCT
TCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACAACCTAATGTCC
CAAACCACCCCAGAAACCCTCCAATCCACCACCTCGACTATGATGGCCGG
CGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCACGTTAGCATGGA
ATGAAGCGCACGGGGGAGATATCGACACGACAAACCCCAATGACCCATCT
TCATCATCCTCCTCATCACATAATACAAAGGGTACTGCGGAATCAACCCT
CCAATCACGTATCCTCATTCTCTCTGTGTCAAGCTCCACCGGTTCAGCGC
ATCAATATATCCCCATCATGAATGCTATATTCGCTTGCCAGAGGCTGCAT
ATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTATTCCTGCAGCA
GGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGATGAGCCGAAGG
GACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATCAGAGGAGTAGA
CGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTCCGGGCGGCGTG
CTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTGTTCGATTTGTT
TGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTTTGACTTGTGGG
AGTCGGTTGGATGTAAGTGATTATGGGGCTAAGCCGGCGGTGGTGGCTAG
AAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGTCTGCGGCGGGGA
CGCCTACGCCTACACCGACGCCGGGGCCGTGA
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Coding sequence (CDS) from alignment at ACJE01000020.1:731537..732768+

>ASPNIDRAFT_42792-T1 ID=ASPNIDRAFT_42792-T1|Name=ASPNIDRAFT_42792-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2286bp|location=Sequence derived from alignment at ACJE01000020.1:731537..732768+ (Aspergillus niger ATCC 1015)
ATGAATACCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGACCG
GCCCCCCTCCCTCCTAACCATCATCCTCGACACCAATCCGCACGCCTGGG
CACTCCTCAACCCCTCCCTCCCCCTCTCCACCGCCATCGCCAACATCCTC
GTCTTCATCAACGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGT
GGTATCCTCACACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAG
CCGCCACCACCACCACCGCCGCCAATAACCTAGACTCCGACGGCGACATC
TCCATGCGCTCCCAACAACCACCACCATCTACTCACACCAACGTAAACAA
ATACCGCCCCTTCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACA
ACCTAATGTCCCAAACCACCCCAGAAACCCTCCAATCCACCACCTCGACT
ATGATGGCCGGCGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCAC
GTTAGCATGGAATGAAGCGCACGGGGGAGATATCGACACGACAAACCCCA
ATGACCCATCTTCATCATCCTCCTCATCACATAATACAAAGGGTACTGCG
GAATCAACCCTCCAATCACGTATCCTCATTCTCTCTGTGTCAAGCTCCAC
CGGTTCAGCGCATCAATATATCCCCATCATGAATGCTATATTCGCTTGCC
AGAGGCTGCATATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTA
TTCCTGCAGCAGGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGA
TGAGCCGAAGGGACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATC
AGAGGAGTAGACGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTC
CGGGCGGCGTGCTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTG
TTCGATTTGTTTGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTT
TGACTTGTGGGAGTCGGTTGGATGTAAGTGATTATGGGGCTAAGCCGGCG
GTGGTGGCTAGAAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGTC
TGCGGCGGGGACGCCTACGCCTACACCGACGCCGGGGCCGTGAATGAATA
CCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGACCGGCCCCCC
TCCCTCCTAACCATCATCCTCGACACCAATCCGCACGCCTGGGCACTCCT
CAACCCCTCCCTCCCCCTCTCCACCGCCATCGCCAACATCCTCGTCTTCA
TCAACGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGTGGTATCC
TCACACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAGCCGCCAC
CACCACCACCGCCGCCAATAACCTAGACTCCGACGGCGACATCTCCATGC
GCTCCCAACAACCACCACCATCTACTCACACCAACGTAAACAAATACCGC
CCCTTCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACAACCTAAT
GTCCCAAACCACCCCAGAAACCCTCCAATCCACCACCTCGACTATGATGG
CCGGCGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCACGTTAGCA
TGGAATGAAGCGCACGGGGGAGATATCGACACGACAAACCCCAATGACCC
ATCTTCATCATCCTCCTCATCACATAATACAAAGGGTACTGCGGAATCAA
CCCTCCAATCACGTATCCTCATTCTCTCTGTGTCAAGCTCCACCGGTTCA
GCGCATCAATATATCCCCATCATGAATGCTATATTCGCTTGCCAGAGGCT
GCATATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTATTCCTGC
AGCAGGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGATGAGCCG
AAGGGACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATCAGAGGAG
TAGACGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTCCGGGCGG
CGTGCTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTGTTCGATT
TGTTTGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTTTGACTTG
TGGGAGTCGGTTGGATGTAAGTGATTATGGGGCTAAGCCGGCGGTGGTGG
CTAGAAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGTCTGCGGCG
GGGACGCCTACGCCTACACCGACGCCGGGGCCGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_42792ASPNIDRAFT_42792Aspergillus niger ATCC 1015gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_42792-T1.exon1ASPNIDRAFT_42792-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_42792-T1.exon2ASPNIDRAFT_42792-T1.exon2Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_42792-T1.cdsASPNIDRAFT_42792-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_42792-T1ASPNIDRAFT_42792-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteBUSCO:EOG0926369X
DBxrefInterPro:IPR036465
DBxrefInterPro:IPR004600
DBxrefPFAM:PF03850
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000020.1supercontigACJE01000020.1:731537..732768 +
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