You are here

Home

ASPNIDRAFT_48862-T1, ASPNIDRAFT_48862-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_48862-T1
Unique NameASPNIDRAFT_48862-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000008.1:1617453..1619075+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_48862-T1 ID=ASPNIDRAFT_48862-T1|Name=ASPNIDRAFT_48862-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1623bp|location=Sequence derived from alignment at ACJE01000008.1:1617453..1619075+ (Aspergillus niger ATCC 1015)
ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCC
GGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCATGGCCTG
CACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC
ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGA
CATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTACGTACGTT
CTCATCTCTTGGCTATTCTTTAAAGAATCATATACTGACATAGTTGTTCT
GGACCGCAGAGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCAC
GCCTGCTGGCCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATA
CCCTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATC
CACGAGGATGACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGT
CCACTCCGCTGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCT
CTCAACGCCATCCGGAATGGGTCCCACGACCTTGCAACCGTTTGGACCGA
CTCACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAA
CATGACCGGAAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGC
GCGTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATC
ATGTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAA
GGAGGCAAAGACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTC
CGGAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCC
CCGATCTACACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCC
ATTGACTGGCCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGAC
ACCCGATCTCGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCC
GATCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGA
TAAGCTATGTAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATC
GGACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCT
GTTGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATA
CCACAAGCGCAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCG
ACACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTC
CACGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAA
GATGCCTACCTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGA
TGCCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACAT
GCTGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCT
TGTGCAGGGTGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATG
CCGCTGCGCAGGCGACTGCTTGA
back to top

Coding sequence (CDS) from alignment at ACJE01000008.1:1617453..1619075+

>ASPNIDRAFT_48862-T1 ID=ASPNIDRAFT_48862-T1|Name=ASPNIDRAFT_48862-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=3114bp|location=Sequence derived from alignment at ACJE01000008.1:1617453..1619075+ (Aspergillus niger ATCC 1015)
ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCC
GGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCATGGCCTG
CACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC
ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGA
CATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTACAGGAAAG
CCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGGCCCCAAT
ACCGTCGTCAAGAACGGCCAGATCATCTCGCATACCCTGCACCGTCACGA
ACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCACGAGGATGACGATC
TGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGCTGGTCGC
TACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCCATCCGGA
ATGGGTCCCACGACCTTGCAACCGTTTGGACCGACTCACCTCCGGAGTCA
TGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGGAAAGCTC
AAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGGGAAAATT
CCCTGACGGTGTCATCGTCTGCGATCAGCCCATCATGTCCGTGAGCCCAA
AGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAAGACCAAG
TTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTCAGAGCGC
TTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCCGATCTACACCAACG
AAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGGCCGCACG
CATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCTCGAACGA
TCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGATCTCGGAAAGAACG
AGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATGTAATATT
GGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACCTTACCAC
AGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGTTGTGGAGGAGATAA
TGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCGCAAAGGC
GAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGCTCTACTC
GGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCACGCCGCGGCGTACT
CTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTACCTGGGCT
CTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACTGGGTGTT
TGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGCTGTCTTGCCTGGCG
CGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGGTGTCGGC
CTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGCAGGCGAC
TGCTTGAATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTC
CTGATCCGGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCA
TGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTA
CCACTACACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAAT
TGGTGGACATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTAC
AGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGG
CCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATACCCTGCACC
GTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCACGAGGAT
GACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGC
TGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCC
ATCCGGAATGGGTCCCACGACCTTGCAACCGTTTGGACCGACTCACCTCC
GGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGG
AAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGG
GAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATCATGTCCGTG
AGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAA
GACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTC
AGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCCGATCTAC
ACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGG
CCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCT
CGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGATCTCGGA
AAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATG
TAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACC
TTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGTTGTGGAG
GAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCG
CAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGC
TCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCACGCCGCG
GCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTAC
CTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACT
GGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGCTGTCTTG
CCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGG
TGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGC
AGGCGACTGCTTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0009982pseudouridine synthase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0009451RNA modification
GO:0001522pseudouridine synthesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_48862ASPNIDRAFT_48862Aspergillus niger ATCC 1015gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_48862-T1.exon1ASPNIDRAFT_48862-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_48862-T1.exon2ASPNIDRAFT_48862-T1.exon2Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_48862-T1.cdsASPNIDRAFT_48862-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_48862-T1ASPNIDRAFT_48862-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR020103
DBxrefInterPro:IPR002942
DBxrefInterPro:IPR006224
DBxrefInterPro:IPR006225
DBxrefInterPro:IPR006145
DBxrefPFAM:PF00849
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000008.1supercontigACJE01000008.1:1617453..1619075 +
Powered by Drupal