You are here

Home

ASPNIDRAFT_50980-T1, ASPNIDRAFT_50980-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_50980-T1
Unique NameASPNIDRAFT_50980-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000012.1:311405..312263-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_50980-T1 ID=ASPNIDRAFT_50980-T1|Name=ASPNIDRAFT_50980-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=859bp|location=Sequence derived from alignment at ACJE01000012.1:311405..312263- (Aspergillus niger ATCC 1015)
ATGACAGAGGCTATTCACGATTACTATCCTTCTACGATCGACTTGCCTCA
TTATGTAACTAACGAGAGTTCGACCTTTTCACTGGTCGCTCAATTTGCTG
TCCTTTGGGGTTTGGCCCTGGGTATAGCGTCCATCATCATTCGTCGTCCG
CGAACACCGGTGACTCAATCAGACCAGTTTGCATTTATCTGGATGTGCTT
CAGTAAGTCGTGTCATATTCTCTACTTCTGCATGGAACAATTATTGACGG
AGGAAAATCAGCCGGATGCATACATCTATTTTTTGAAAGCTACTTCGTGG
TCTACCACAAGACCCTAGCCGGCTCGCACACTTTATTCGGCCAACTCTGG
AAGGAATATTCCCTTTCTGACTCACGCTACCTGACCTCAGATTCATTCCT
TGTGTCTATGGAAGCAGTTACCGCTGTAAGTCCTTATATCCAACACCCTG
ACACCTAATCAACTCATCATCAACTAACTTGTATAGTTTTGCTGGGGCCC
GCTCGCATTCCTCATTGCATACTGCATTGCCACACAGCATCCAGCCCGAC
ATGTCTTGCAGCTTATTGTCTCCGTAGGCCAGGTTTACGGAGATGTGCTC
TACTACGCTACGAGCATGTTCGACCTTTATTACCATGAAGTGTCATTCTG
TCGTCCGGAGGGCTACTATTTCTGGTTCTACTACGTTTTCAAGAACTTTA
TCTGGCTTGCTGCTGGTTCTTGTGAGTTTATCAATACCTTGCTGAGTGGG
AACTGTGATTGCTAATCATATTGCAGATTTCGCGTACGAAAGTGCGGTGG
AGATCACGCGTGGTATGAAAAAGTTAAGCGCAATGGATCGGAAGCGGAAG
GACTGTTAG
back to top

Coding sequence (CDS) from alignment at ACJE01000012.1:311405..312263-

>ASPNIDRAFT_50980-T1 ID=ASPNIDRAFT_50980-T1|Name=ASPNIDRAFT_50980-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2736bp|location=Sequence derived from alignment at ACJE01000012.1:311405..312263- (Aspergillus niger ATCC 1015)
ATTTCGCGTACGAAAGTGCGGTGGAGATCACGCGTGGTATGAAAAAGTTA
AGCGCAATGGATCGGAAGCGGAAGGACTGTTAGTTTTGCTGGGGCCCGCT
CGCATTCCTCATTGCATACTGCATTGCCACACAGCATCCAGCCCGACATG
TCTTGCAGCTTATTGTCTCCGTAGGCCAGGTTTACGGAGATGTGCTCTAC
TACGCTACGAGCATGTTCGACCTTTATTACCATGAAGTGTCATTCTGTCG
TCCGGAGGGCTACTATTTCTGGTTCTACTACGTTTTCAAGAACTTTATCT
GGCTTGCTGCTGGTTCTTCCGGATGCATACATCTATTTTTTGAAAGCTAC
TTCGTGGTCTACCACAAGACCCTAGCCGGCTCGCACACTTTATTCGGCCA
ACTCTGGAAGGAATATTCCCTTTCTGACTCACGCTACCTGACCTCAGATT
CATTCCTTGTGTCTATGGAAGCAGTTACCGCTATGACAGAGGCTATTCAC
GATTACTATCCTTCTACGATCGACTTGCCTCATTATGTAACTAACGAGAG
TTCGACCTTTTCACTGGTCGCTCAATTTGCTGTCCTTTGGGGTTTGGCCC
TGGGTATAGCGTCCATCATCATTCGTCGTCCGCGAACACCGGTGACTCAA
TCAGACCAGTTTGCATTTATCTGGATGTGCTTCAATTTCGCGTACGAAAG
TGCGGTGGAGATCACGCGTGGTATGAAAAAGTTAAGCGCAATGGATCGGA
AGCGGAAGGACTGTTAGTTTTGCTGGGGCCCGCTCGCATTCCTCATTGCA
TACTGCATTGCCACACAGCATCCAGCCCGACATGTCTTGCAGCTTATTGT
CTCCGTAGGCCAGGTTTACGGAGATGTGCTCTACTACGCTACGAGCATGT
TCGACCTTTATTACCATGAAGTGTCATTCTGTCGTCCGGAGGGCTACTAT
TTCTGGTTCTACTACGTTTTCAAGAACTTTATCTGGCTTGCTGCTGGTTC
TTCCGGATGCATACATCTATTTTTTGAAAGCTACTTCGTGGTCTACCACA
AGACCCTAGCCGGCTCGCACACTTTATTCGGCCAACTCTGGAAGGAATAT
TCCCTTTCTGACTCACGCTACCTGACCTCAGATTCATTCCTTGTGTCTAT
GGAAGCAGTTACCGCTATGACAGAGGCTATTCACGATTACTATCCTTCTA
CGATCGACTTGCCTCATTATGTAACTAACGAGAGTTCGACCTTTTCACTG
GTCGCTCAATTTGCTGTCCTTTGGGGTTTGGCCCTGGGTATAGCGTCCAT
CATCATTCGTCGTCCGCGAACACCGGTGACTCAATCAGACCAGTTTGCAT
TTATCTGGATGTGCTTCAATTTCGCGTACGAAAGTGCGGTGGAGATCACG
CGTGGTATGAAAAAGTTAAGCGCAATGGATCGGAAGCGGAAGGACTGTTA
GTTTTGCTGGGGCCCGCTCGCATTCCTCATTGCATACTGCATTGCCACAC
AGCATCCAGCCCGACATGTCTTGCAGCTTATTGTCTCCGTAGGCCAGGTT
TACGGAGATGTGCTCTACTACGCTACGAGCATGTTCGACCTTTATTACCA
TGAAGTGTCATTCTGTCGTCCGGAGGGCTACTATTTCTGGTTCTACTACG
TTTTCAAGAACTTTATCTGGCTTGCTGCTGGTTCTTCCGGATGCATACAT
CTATTTTTTGAAAGCTACTTCGTGGTCTACCACAAGACCCTAGCCGGCTC
GCACACTTTATTCGGCCAACTCTGGAAGGAATATTCCCTTTCTGACTCAC
GCTACCTGACCTCAGATTCATTCCTTGTGTCTATGGAAGCAGTTACCGCT
ATGACAGAGGCTATTCACGATTACTATCCTTCTACGATCGACTTGCCTCA
TTATGTAACTAACGAGAGTTCGACCTTTTCACTGGTCGCTCAATTTGCTG
TCCTTTGGGGTTTGGCCCTGGGTATAGCGTCCATCATCATTCGTCGTCCG
CGAACACCGGTGACTCAATCAGACCAGTTTGCATTTATCTGGATGTGCTT
CAATTTCGCGTACGAAAGTGCGGTGGAGATCACGCGTGGTATGAAAAAGT
TAAGCGCAATGGATCGGAAGCGGAAGGACTGTTAGTTTTGCTGGGGCCCG
CTCGCATTCCTCATTGCATACTGCATTGCCACACAGCATCCAGCCCGACA
TGTCTTGCAGCTTATTGTCTCCGTAGGCCAGGTTTACGGAGATGTGCTCT
ACTACGCTACGAGCATGTTCGACCTTTATTACCATGAAGTGTCATTCTGT
CGTCCGGAGGGCTACTATTTCTGGTTCTACTACGTTTTCAAGAACTTTAT
CTGGCTTGCTGCTGGTTCTTCCGGATGCATACATCTATTTTTTGAAAGCT
ACTTCGTGGTCTACCACAAGACCCTAGCCGGCTCGCACACTTTATTCGGC
CAACTCTGGAAGGAATATTCCCTTTCTGACTCACGCTACCTGACCTCAGA
TTCATTCCTTGTGTCTATGGAAGCAGTTACCGCTATGACAGAGGCTATTC
ACGATTACTATCCTTCTACGATCGACTTGCCTCATTATGTAACTAACGAG
AGTTCGACCTTTTCACTGGTCGCTCAATTTGCTGTCCTTTGGGGTTTGGC
CCTGGGTATAGCGTCCATCATCATTCGTCGTCCGCGAACACCGGTGACTC
AATCAGACCAGTTTGCATTTATCTGGATGTGCTTCA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0016125sterol metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0047750cholestenol delta-isomerase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_50980ASPNIDRAFT_50980Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_50980-T1ASPNIDRAFT_50980-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_50980-T1.cdsASPNIDRAFT_50980-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_50980-T1.exon4ASPNIDRAFT_50980-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_50980-T1.exon3ASPNIDRAFT_50980-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_50980-T1.exon2ASPNIDRAFT_50980-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_50980-T1.exon1ASPNIDRAFT_50980-T1.exon1Aspergillus niger ATCC 1015exon


Properties
Property NameValue
DBxrefInterPro:IPR033118
DBxrefInterPro:IPR007905
DBxrefPFAM:PF05241
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000012.1supercontigACJE01000012.1:311405..312263 -
Powered by Drupal