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ASPNIDRAFT_55338-T1, ASPNIDRAFT_55338-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_55338-T1
Unique NameASPNIDRAFT_55338-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000004.1:2245631..2247324-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_55338-T1 ID=ASPNIDRAFT_55338-T1|Name=ASPNIDRAFT_55338-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1694bp|location=Sequence derived from alignment at ACJE01000004.1:2245631..2247324- (Aspergillus niger ATCC 1015)
CTCCTCCCAGACTCCCAACATGGCTGAGCAGCTCGTCCTTCGCGGTACCC
TTGAGGGTCACAATGGCTGGGTTACCTGCCTGGCTACCTCTCTGGAGAAG
TAAGGCAACACTACACTACACCGAATTGAAGACATGAAACAAATGCGTTT
TGTTGCGAAAATCGAACAAGGTGTGCATGTGCTACCGAACAAGTGGTATA
TGGATGCATTGTTGCGAGAAAAGAAAATGATCGCATTGGTTGAAACATGA
AATATTCATATATCAAATGGACAAAACTGGGTTCTGACTTTATGTTTTTC
TTCCTCGATTATAGCCCCAACATGCTGCTCTCTGGCAGTCGCGACAAGAC
CCTGATCATCTGGAACCTGACCCGCGACGAGCAGGCCTACGGTTACCCCA
AGCGCAGCCTTGAGGGTCACTCTCACATCGTCTCTGACTGTGTATGCCCT
CCGAATTACTCCGTCCCCACCATGTCCCAGTCCAGACAAGAAAAGACTTT
CCCCACAGACGAAGGACGAAGCCCGATCGAAACCTACGAGAAGGCGGGAC
TGGGCAAAGAATAAAAAGGAAGATGATTTGGCTGACCGTGCATGGGGATT
TATAGGTGATCTCCTCCGACGGTGCCTACGCTCTGTCCTCCTCCTGGGAC
AAGTCCCTCCGCCTGTGGGAGCTCTCCACTGGTGAGACCACCCGGACCTT
CGTCGGCCACACCAACGACGTCCTCTCCGTTTCTTTCTCCGCCGACAACC
GCCAGATTGTCTCCGCTTCCCGTGACCGCTCCATCAAGCTCTGGAACACC
CTTGGTGACTGCAAGTTCACCATCACCGACAAGGGCCACACCGAGTGGGT
TTCCTGCGTTCGCTTCAGCCCCAACCCCCAGAACCCCGTCATCGTCTCCG
CTGGTTGGGACAAGCTCGTCAAGGTACGTTATGACTCGACTCTCGCATAC
CCAAGTTTATATCATTCGCAATCTCGACACGTCCAGAAGATGTTTTTGCA
TAAACGTATTTGCTACTTCAGAGCCTTTCACGGCCATGAGACAAACATTC
ACCAATGCCCTGATGGACAATCGATAAACATATCTTGTTTATGTTGTTAT
TGCTTTTATTGCTTTTCCACCGAGAACTTCAACTTGAAGAATCTTATTTC
TGTGGAGTCATGAAGCTAACATGCAAAACAACTAGGTTTGGGAGCTCGCT
TCCTGCCGTCTCCAGACCGACCACATCGGTCACACCGGCTACATCAACGC
CGTCACCATCTCCCCCGATGGATCCCTCTGCGCCTCCGGTGGCAAGGACG
GCACCACCATGCTCTGGGACCTTAACGAGTCCAAGCACCTCTACTCCCTC
CACGCCGGTGACGAGATCCACGCCCTCGTCTTCTCCCCCAACCGTTACTG
GCTCTGCGCTGCCACCTCCAGCAGCATCACCATCTTCGACCTCGAGAAGA
AGAGCAAGGTTGACGAGCTCAAGCCCGAGTACATCGAGAAGGGCAAGAAG
AGCCGCGAGCCCGAGTGTGTCAGCTTGGCCTGGAGCGCTGACGGCCAGAC
TCTGTTCGCTGGTTACACCGACAACAAGATCCGCGCTTGGGGTGTCATGT
CGAGGGCATAGATTGATACCCATCAAGTAATCACGGGACGGTGTTGAGTT
TTAGCGGAGGAGAGAAATCAAATAACAAAGATATCTGTTTTTTA
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Coding sequence (CDS) from alignment at ACJE01000004.1:2245631..2247324-

>ASPNIDRAFT_55338-T1 ID=ASPNIDRAFT_55338-T1|Name=ASPNIDRAFT_55338-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=3804bp|location=Sequence derived from alignment at ACJE01000004.1:2245631..2247324- (Aspergillus niger ATCC 1015)
GTTTGGGAGCTCGCTTCCTGCCGTCTCCAGACCGACCACATCGGTCACAC
CGGCTACATCAACGCCGTCACCATCTCCCCCGATGGATCCCTCTGCGCCT
CCGGTGGCAAGGACGGCACCACCATGCTCTGGGACCTTAACGAGTCCAAG
CACCTCTACTCCCTCCACGCCGGTGACGAGATCCACGCCCTCGTCTTCTC
CCCCAACCGTTACTGGCTCTGCGCTGCCACCTCCAGCAGCATCACCATCT
TCGACCTCGAGAAGAAGAGCAAGGTTGACGAGCTCAAGCCCGAGTACATC
GAGAAGGGCAAGAAGAGCCGCGAGCCCGAGTGTGTCAGCTTGGCCTGGAG
CGCTGACGGCCAGACTCTGTTCGCTGGTTACACCGACAACAAGATCCGCG
CTTGGGGTGTCATGTCGAGGGCATAGGTGATCTCCTCCGACGGTGCCTAC
GCTCTGTCCTCCTCCTGGGACAAGTCCCTCCGCCTGTGGGAGCTCTCCAC
TGGTGAGACCACCCGGACCTTCGTCGGCCACACCAACGACGTCCTCTCCG
TTTCTTTCTCCGCCGACAACCGCCAGATTGTCTCCGCTTCCCGTGACCGC
TCCATCAAGCTCTGGAACACCCTTGGTGACTGCAAGTTCACCATCACCGA
CAAGGGCCACACCGAGTGGGTTTCCTGCGTTCGCTTCAGCCCCAACCCCC
AGAACCCCGTCATCGTCTCCGCTGGTTGGGACAAGCTCGTCAAGCCCCAA
CATGCTGCTCTCTGGCAGTCGCGACAAGACCCTGATCATCTGGAACCTGA
CCCGCGACGAGCAGGCCTACGGTTACCCCAAGCGCAGCCTTGAGGGTCAC
TCTCACATCGTCTCTGACTGTATGGCTGAGCAGCTCGTCCTTCGCGGTAC
CCTTGAGGGTCACAATGGCTGGGTTACCTGCCTGGCTACCTCTCTGGAGA
AGTTTGGGAGCTCGCTTCCTGCCGTCTCCAGACCGACCACATCGGTCACA
CCGGCTACATCAACGCCGTCACCATCTCCCCCGATGGATCCCTCTGCGCC
TCCGGTGGCAAGGACGGCACCACCATGCTCTGGGACCTTAACGAGTCCAA
GCACCTCTACTCCCTCCACGCCGGTGACGAGATCCACGCCCTCGTCTTCT
CCCCCAACCGTTACTGGCTCTGCGCTGCCACCTCCAGCAGCATCACCATC
TTCGACCTCGAGAAGAAGAGCAAGGTTGACGAGCTCAAGCCCGAGTACAT
CGAGAAGGGCAAGAAGAGCCGCGAGCCCGAGTGTGTCAGCTTGGCCTGGA
GCGCTGACGGCCAGACTCTGTTCGCTGGTTACACCGACAACAAGATCCGC
GCTTGGGGTGTCATGTCGAGGGCATAGGTGATCTCCTCCGACGGTGCCTA
CGCTCTGTCCTCCTCCTGGGACAAGTCCCTCCGCCTGTGGGAGCTCTCCA
CTGGTGAGACCACCCGGACCTTCGTCGGCCACACCAACGACGTCCTCTCC
GTTTCTTTCTCCGCCGACAACCGCCAGATTGTCTCCGCTTCCCGTGACCG
CTCCATCAAGCTCTGGAACACCCTTGGTGACTGCAAGTTCACCATCACCG
ACAAGGGCCACACCGAGTGGGTTTCCTGCGTTCGCTTCAGCCCCAACCCC
CAGAACCCCGTCATCGTCTCCGCTGGTTGGGACAAGCTCGTCAAGCCCCA
ACATGCTGCTCTCTGGCAGTCGCGACAAGACCCTGATCATCTGGAACCTG
ACCCGCGACGAGCAGGCCTACGGTTACCCCAAGCGCAGCCTTGAGGGTCA
CTCTCACATCGTCTCTGACTGTATGGCTGAGCAGCTCGTCCTTCGCGGTA
CCCTTGAGGGTCACAATGGCTGGGTTACCTGCCTGGCTACCTCTCTGGAG
AAGTTTGGGAGCTCGCTTCCTGCCGTCTCCAGACCGACCACATCGGTCAC
ACCGGCTACATCAACGCCGTCACCATCTCCCCCGATGGATCCCTCTGCGC
CTCCGGTGGCAAGGACGGCACCACCATGCTCTGGGACCTTAACGAGTCCA
AGCACCTCTACTCCCTCCACGCCGGTGACGAGATCCACGCCCTCGTCTTC
TCCCCCAACCGTTACTGGCTCTGCGCTGCCACCTCCAGCAGCATCACCAT
CTTCGACCTCGAGAAGAAGAGCAAGGTTGACGAGCTCAAGCCCGAGTACA
TCGAGAAGGGCAAGAAGAGCCGCGAGCCCGAGTGTGTCAGCTTGGCCTGG
AGCGCTGACGGCCAGACTCTGTTCGCTGGTTACACCGACAACAAGATCCG
CGCTTGGGGTGTCATGTCGAGGGCATAGGTGATCTCCTCCGACGGTGCCT
ACGCTCTGTCCTCCTCCTGGGACAAGTCCCTCCGCCTGTGGGAGCTCTCC
ACTGGTGAGACCACCCGGACCTTCGTCGGCCACACCAACGACGTCCTCTC
CGTTTCTTTCTCCGCCGACAACCGCCAGATTGTCTCCGCTTCCCGTGACC
GCTCCATCAAGCTCTGGAACACCCTTGGTGACTGCAAGTTCACCATCACC
GACAAGGGCCACACCGAGTGGGTTTCCTGCGTTCGCTTCAGCCCCAACCC
CCAGAACCCCGTCATCGTCTCCGCTGGTTGGGACAAGCTCGTCAAGCCCC
AACATGCTGCTCTCTGGCAGTCGCGACAAGACCCTGATCATCTGGAACCT
GACCCGCGACGAGCAGGCCTACGGTTACCCCAAGCGCAGCCTTGAGGGTC
ACTCTCACATCGTCTCTGACTGTATGGCTGAGCAGCTCGTCCTTCGCGGT
ACCCTTGAGGGTCACAATGGCTGGGTTACCTGCCTGGCTACCTCTCTGGA
GAAGTTTGGGAGCTCGCTTCCTGCCGTCTCCAGACCGACCACATCGGTCA
CACCGGCTACATCAACGCCGTCACCATCTCCCCCGATGGATCCCTCTGCG
CCTCCGGTGGCAAGGACGGCACCACCATGCTCTGGGACCTTAACGAGTCC
AAGCACCTCTACTCCCTCCACGCCGGTGACGAGATCCACGCCCTCGTCTT
CTCCCCCAACCGTTACTGGCTCTGCGCTGCCACCTCCAGCAGCATCACCA
TCTTCGACCTCGAGAAGAAGAGCAAGGTTGACGAGCTCAAGCCCGAGTAC
ATCGAGAAGGGCAAGAAGAGCCGCGAGCCCGAGTGTGTCAGCTTGGCCTG
GAGCGCTGACGGCCAGACTCTGTTCGCTGGTTACACCGACAACAAGATCC
GCGCTTGGGGTGTCATGTCGAGGGCATAGGTGATCTCCTCCGACGGTGCC
TACGCTCTGTCCTCCTCCTGGGACAAGTCCCTCCGCCTGTGGGAGCTCTC
CACTGGTGAGACCACCCGGACCTTCGTCGGCCACACCAACGACGTCCTCT
CCGTTTCTTTCTCCGCCGACAACCGCCAGATTGTCTCCGCTTCCCGTGAC
CGCTCCATCAAGCTCTGGAACACCCTTGGTGACTGCAAGTTCACCATCAC
CGACAAGGGCCACACCGAGTGGGTTTCCTGCGTTCGCTTCAGCCCCAACC
CCCAGAACCCCGTCATCGTCTCCGCTGGTTGGGACAAGCTCGTCAAGCCC
CAACATGCTGCTCTCTGGCAGTCGCGACAAGACCCTGATCATCTGGAACC
TGACCCGCGACGAGCAGGCCTACGGTTACCCCAAGCGCAGCCTTGAGGGT
CACTCTCACATCGTCTCTGACTGTATGGCTGAGCAGCTCGTCCTTCGCGG
TACCCTTGAGGGTCACAATGGCTGGGTTACCTGCCTGGCTACCTCTCTGG
AGAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CPC2ASPNIDRAFT_55338Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55338-T1ASPNIDRAFT_55338-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55338-T1.cdsASPNIDRAFT_55338-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55338-T1.utr3p1ASPNIDRAFT_55338-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55338-T1.exon4ASPNIDRAFT_55338-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_55338-T1.exon3ASPNIDRAFT_55338-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_55338-T1.exon2ASPNIDRAFT_55338-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_55338-T1.exon1ASPNIDRAFT_55338-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55338-T1.utr5p1ASPNIDRAFT_55338-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092636T6
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR017986
DBxrefInterPro:IPR019775
DBxrefInterPro:IPR015943
DBxrefInterPro:IPR001680
DBxrefInterPro:IPR020472
DBxrefPFAM:PF00400
Productcross-pathway control WD-repeat protein cpc2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000004.1supercontigACJE01000004.1:2245631..2247324 -
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