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ASPNIDRAFT_55496-T1, ASPNIDRAFT_55496-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_55496-T1
Unique NameASPNIDRAFT_55496-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000004.1:275228..276055-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_55496-T1 ID=ASPNIDRAFT_55496-T1|Name=ASPNIDRAFT_55496-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=828bp|location=Sequence derived from alignment at ACJE01000004.1:275228..276055- (Aspergillus niger ATCC 1015)
TGCAGCCTTCGCGTACTCTTCATCTACTCTAGATCCTCGACCTTTCCACC
TATATCCATTTCTTATTACCGTCCAGCAGTCCATCTCCGCGAACCGAGCT
TGGCGCAACACGATCCACCATGGCCAACTATCTCGCCTCCATCTTCGGTA
CAGAGCAGGACAAGGTCAACTGCTCCTTCTACTACAAAATCGGAGCTTGC
AGACATGGCGACCGCTGCTCCCGAAAGCACGTTAAGCCGTCATACTCTCA
GACGATCCTGATGCCGAACATGTACCAGAATCCCGCGTACGACCCGAAGA
GCAAGATGAACCCCAGTCAGCTACAGAACCACTTTGATGCTTTCTACGAG
GATGTGTGGTGCGAGATGTGCAAGTACGGCGAGTTGGAGGAGTTGGTTGT
CTGCGATAACAACAATGACCGTGAGTCGCATCCATTCATATCCCTTCCCC
GGATAGTGGTAAGATATAGGCTAACATAGAGTTTCTTCTTCTCTAATAGA
CCTCATCGGAAATGTCTACGCGCGCTTCAAATACGAAGAAGATGCCCAGG
CCGCCTGCGACGCTTTGAATTCACGGTGGTACGCGGCACGACCTATATAT
TGCGAATTATCACCGGTTACAGATTTCCGAGAAGCTTGTTGTCGGTTAAA
TAGCGGCGAGGGGTGTGTACGTGGTGGATTCTGCAACTTCATTCATCGGA
AGGACCCCAGCAATGAATTGGATCGGGATCTTCGTCTCAGTACGAAGAAG
TGGTTGAAGGAGCGTGGCAGGGATGCGAGAAGTGTCAGCCGCAGTCCTAG
TCCGGAGCCGACCCGGAGGAGGTACTAG
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Coding sequence (CDS) from alignment at ACJE01000004.1:275228..276055-

>ASPNIDRAFT_55496-T1 ID=ASPNIDRAFT_55496-T1|Name=ASPNIDRAFT_55496-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1260bp|location=Sequence derived from alignment at ACJE01000004.1:275228..276055- (Aspergillus niger ATCC 1015)
ACCTCATCGGAAATGTCTACGCGCGCTTCAAATACGAAGAAGATGCCCAG
GCCGCCTGCGACGCTTTGAATTCACGGTGGTACGCGGCACGACCTATATA
TTGCGAATTATCACCGGTTACAGATTTCCGAGAAGCTTGTTGTCGGTTAA
ATAGCGGCGAGGGGTGTGTACGTGGTGGATTCTGCAACTTCATTCATCGG
AAGGACCCCAGCAATGAATTGGATCGGGATCTTCGTCTCAGTACGAAGAA
GTGGTTGAAGGAGCGTGGCAGGGATGCGAGAAGTGTCAGCCGCAGTCCTA
GTCCGGAGCCGACCCGGAGGAGGTACTAGATGGCCAACTATCTCGCCTCC
ATCTTCGGTACAGAGCAGGACAAGGTCAACTGCTCCTTCTACTACAAAAT
CGGAGCTTGCAGACATGGCGACCGCTGCTCCCGAAAGCACGTTAAGCCGT
CATACTCTCAGACGATCCTGATGCCGAACATGTACCAGAATCCCGCGTAC
GACCCGAAGAGCAAGATGAACCCCAGTCAGCTACAGAACCACTTTGATGC
TTTCTACGAGGATGTGTGGTGCGAGATGTGCAAGTACGGCGAGTTGGAGG
AGTTGGTTGTCTGCGATAACAACAATGACCACCTCATCGGAAATGTCTAC
GCGCGCTTCAAATACGAAGAAGATGCCCAGGCCGCCTGCGACGCTTTGAA
TTCACGGTGGTACGCGGCACGACCTATATATTGCGAATTATCACCGGTTA
CAGATTTCCGAGAAGCTTGTTGTCGGTTAAATAGCGGCGAGGGGTGTGTA
CGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAATT
GGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGTTGAAGGAGCGTGGCA
GGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAGG
AGGTACTAGATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGA
CAAGGTCAACTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCG
ACCGCTGCTCCCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTG
ATGCCGAACATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAA
CCCCAGTCAGCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGT
GCGAGATGTGCAAGTACGGCGAGTTGGAGGAGTTGGTTGTCTGCGATAAC
AACAATGACC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF complex
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55496ASPNIDRAFT_55496Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55496-T1ASPNIDRAFT_55496-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55496-T1.cdsASPNIDRAFT_55496-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55496-T1.exon2ASPNIDRAFT_55496-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_55496-T1.exon1ASPNIDRAFT_55496-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_55496-T1.utr5p1ASPNIDRAFT_55496-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR000504
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000571
DBxrefInterPro:IPR009145
DBxrefPFAM:PF00642
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000004.1supercontigACJE01000004.1:275228..276055 -
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