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ASPNIDRAFT_56354-T1, ASPNIDRAFT_56354-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_56354-T1
Unique NameASPNIDRAFT_56354-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000008.1:1439600..1440894+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_56354-T1 ID=ASPNIDRAFT_56354-T1|Name=ASPNIDRAFT_56354-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1295bp|location=Sequence derived from alignment at ACJE01000008.1:1439600..1440894+ (Aspergillus niger ATCC 1015)
CTCATCTTCACTCCGATTGCTAAAAGGGGTGTGTGTTGCCTGGATTCAGG
CTGTTGCTCCCCTCATCGATTCACCCTCCAGCGCTCCTGAACTAGTGGGT
CGTATACCATACCAGCCACACATCCACACCCCCGGATGCCCAAAGCCAAC
TGGATAATCTGTACCCATCCAGCACCTCTTAGGCCCAAAGGGAAAAGCAC
TATGGTGGCTATTGCTACCTCTTCTATACTAGATTAACCCCCACACGATA
CCCCCTTCCCGCTAGACTCCCAACAATGGCTGCTAATTACTGGGCATCAA
CTCAACGCCGACACTGGCTCTTCACGAGAGAGAAGTTGGCAGAGATTCGG
GAGAACTTTAGAGAGCGGGACATGGTCGCTCATAGTCAGTTTCCTCTGCC
GGATCAGAGGTTGCTGAACATCTACTTCAGTCAACGTAAGATAACATAGT
ATATATCCTAAATCGGTGAGCATCCGAGCTCACCAGACCAACAGAACTCA
TCAAATTGGGGAAACGGATGTCTACTCGACAACAAGCACTTGCGACAGCG
CAAGTCTATGTCAAGAGGTTCTACACCAAGAACGAGATTAGACATACAAA
CCCGTATCTTGTCGTCACAACTGCCTTCTATCTGGCCTGTAAAATGGAAG
AATGCCCTCAACATATTCGTTTTGTCGTCGGAGAGGCTAGAGGTCTCTGG
CCAGGTACGGAACACTCGCGTTAATGCACTTCGTGCGCTTCCCGCTGACG
TGGCTACAGAGTTTATTGCCCCAGATGTTTCAAAACTAGGAGAATGCGAA
TTCTCTTTGATATCGGAAATGAACTCTCAGCTTATTGTGCACCACCCATA
TCGAACTTTATCAGAACTCCAACCCGAGCTGTCACTTACGTCAGATGAAG
TTGCTCTTGCATGGTCTGTAATCAACGACCACTATCTCACCGACTTGCCG
CTCTTATATCCGCCTCACGTCATCGCTGTCATGGCGATTATCGTCGCCGT
GGTCTTCAAGCCCAGCCAAACGAGCTTTCACGGGTCAGCAGCGCCACTGG
CCAGCGCGATGCGCGATGGGGGGATGAACATCCTTGGAGCATTGGGAGAT
AAGGGCGGCAACGGCCCTCCTCCCCGCATTCAACGACTTATAGGATGGCT
TGCCGAGAGCGAGGTGGACATCAAGGCAGTCATAGAGTGTACTCAAGAGC
TGGTGTCGCTTTACGAGGTCTGGGAGCAATACAGCGAAAAGCATTGCAAG
GAGCTTCTTGGACGGATGGTGAAGAGCAAGAACCTGGACAAATGA
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Coding sequence (CDS) from alignment at ACJE01000008.1:1439600..1440894+

>ASPNIDRAFT_56354-T1 ID=ASPNIDRAFT_56354-T1|Name=ASPNIDRAFT_56354-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2718bp|location=Sequence derived from alignment at ACJE01000008.1:1439600..1440894+ (Aspergillus niger ATCC 1015)
ATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCTCTTCAC
GAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGGACATGG
TCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAACATCTAC
TTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCGACAACA
AGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCAAGAACG
AGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTCTATCTG
GCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGTCGGAGA
GGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAAAACTAG
GAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTTATTGTG
CACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTCACTTAC
GTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACTATCTCA
CCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATGGCGATT
ATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGGGTCAGC
AGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCCTTGGAG
CATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAACGACTT
ATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCATAGAGTG
TACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACAGCGAAA
AGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAACCTGGAC
AAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCT
CTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGG
ACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAAC
ATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCG
ACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCA
AGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTC
TATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGT
CGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAA
AACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTT
ATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTC
ACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACT
ATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATG
GCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGG
GTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCC
TTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAA
CGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCAT
AGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACA
GCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAAC
CTGGACAAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACA
CTGGCTCTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAG
AGCGGGACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTG
CTGAACATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTC
TACTCGACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCT
ACACCAAGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACT
GCCTTCTATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTT
TGTCGTCGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATG
TTTCAAAACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCT
CAGCTTATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGA
GCTGTCACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACG
ACCACTATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCT
GTCATGGCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTT
TCACGGGTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGA
ACATCCTTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGC
ATTCAACGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGC
AGTCATAGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGC
AATACAGCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGC
AAGAACCTGGACAAATGA
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSN8ASPNIDRAFT_56354Aspergillus niger ATCC 1015gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56354-T1.utr5p1ASPNIDRAFT_56354-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56354-T1.exon1ASPNIDRAFT_56354-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56354-T1.exon2ASPNIDRAFT_56354-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56354-T1.exon3ASPNIDRAFT_56354-T1.exon3Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56354-T1.cdsASPNIDRAFT_56354-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56354-T1ASPNIDRAFT_56354-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262K8C
DBxrefInterPro:IPR036915
DBxrefInterPro:IPR006671
DBxrefInterPro:IPR013763
DBxrefPFAM:PF00134
ProductRNA polymerase II holoenzyme cyclin-like subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000008.1supercontigACJE01000008.1:1439600..1440894 +
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