You are here

Home

ASPNIDRAFT_56861-T1, ASPNIDRAFT_56861-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_56861-T1
Unique NameASPNIDRAFT_56861-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000001.1:1635266..1636372-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_56861-T1 ID=ASPNIDRAFT_56861-T1|Name=ASPNIDRAFT_56861-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1107bp|location=Sequence derived from alignment at ACJE01000001.1:1635266..1636372- (Aspergillus niger ATCC 1015)
ATTGATAACCCTTTATTTGAACAAGCAAGCATTTGATAATCTCCATTAGG
TACCAGTGATTTCTCACTTATTTTGCCATCATGAATATCTTCAGGTTATT
AGGTGAGTTGTTTGTTCGCTCTCAGTTCAATTGACGCACCATGCTAATTC
TTACAAACAAGCCGACTTTTCCCATCTTGCGTCTATATTCATATTATTGC
AGAAGATGAAGTCTTCAAGTGTATGCTGTCATTAAAACGGATTCTTAGCA
TTTTTCTGACTGGATCCAGAGTTGCTCAGGGCTTTCATTCAAGTCCCAGG
CGCTATATTTGATGGTTTTTGTAACGCGTTATCTTGGTAAGCTTCAGGGA
TTCAATACTCGATTGTATAGGTCTAGCTCTCTGACTGGTTTCTGATCACA
GATTTATTCTGGGCTTTCACGGACTCTTTCTATAATACGACTTTTAAAAT
CCTGTTCATCGGCTCGTCAGCTTATATCATCTACCTCATGCTCAACGACT
ATAAGCCAACGCATGACCCCAACACTGATACCTTTAAAGTGCAGTATCTC
CTCGGGTTCAGTGCTTTGTTGGCTCTCCTTTTCCCGCACGACTATAGCGT
CTCAGAGGTAAACCCCCTGGCAGGACATTTGTCACACCTCATCTGACCTT
TCTAGATTCTTTGGACGTTCTCTATATGGCTCGAGTCCGTGGCTATTTTG
CCCCAGCTTTTCATGCTTCAGCGCACTGGGGAGGCGGACACCATAACAAC
GCATTATCTTTTCGCTTTGGGATTGTATCGTGCCCTTTACATCCCCAATT
GGATTTATCGCTATTTCGCAGAGAGCCACTTTCAGCCTATCCCTGTTGTA
GCCGGTATCATCCAGACACTCTTATATTCTGATTTCTTTTATATCTATTA
CACCAAGTGAGTCCCAGCAAGTTTCCTCTATCAGTACCCAGGGGCGCTAA
CTGTCATACAGGGTTATGAAGGGTAAGAAGTTCTCATTGCCTGTTTAAGT
TCGGCGTACATGGTGACTGGTTTCGTCATAAACGGCGTTGCAAGTTCCGA
GGAGGATAGCCAGCCGTTGGAGGAGAATAGTGTGTCTATCTACCATTGAA
TTTCAAC
back to top

Coding sequence (CDS) from alignment at ACJE01000001.1:1635266..1636372-

>ASPNIDRAFT_56861-T1 ID=ASPNIDRAFT_56861-T1|Name=ASPNIDRAFT_56861-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=3549bp|location=Sequence derived from alignment at ACJE01000001.1:1635266..1636372- (Aspergillus niger ATCC 1015)
GGTTATGAAGGGTAAGAAGTTCTCATTGCCTGTTTAAAGCCACTTTCAGC
CTATCCCTGTTGTAGCCGGTATCATCCAGACACTCTTATATTCTGATTTC
TTTTATATCTATTACACCAAATTCTTTGGACGTTCTCTATATGGCTCGAG
TCCATTTATTCTGGGCTTTCACGGACTCTTTCTATAATACGACTTTTAAA
ATCCTGTTCATCGGCTCGTCAGCTTATATCATCTACCTCATGCTCAACGA
CTATAAGCCAACGCATGACCCCAACACTGATACCTTTAAAGTGCAGTATC
TCCTCGGGTTCAGTGCTTTGTTGGCTCTCCTTTTCCCGCACGACTATAGC
GTCTCAGAGAGTTGCTCAGGGCTTTCATTCAAGTCCCAGGCGCTATATTT
GATGGTTTTTGTAACGCGTTATCTTGCCGACTTTTCCCATCTTGCGTCTA
TATTCATATTATTGCAGAAGATGAAGTCTTCAAGTATGAATATCTTCAGG
TTATTAGGGTTATGAAGGGTAAGAAGTTCTCATTGCCTGTTTAAAGCCAC
TTTCAGCCTATCCCTGTTGTAGCCGGTATCATCCAGACACTCTTATATTC
TGATTTCTTTTATATCTATTACACCAAATTCTTTGGACGTTCTCTATATG
GCTCGAGTCCATTTATTCTGGGCTTTCACGGACTCTTTCTATAATACGAC
TTTTAAAATCCTGTTCATCGGCTCGTCAGCTTATATCATCTACCTCATGC
TCAACGACTATAAGCCAACGCATGACCCCAACACTGATACCTTTAAAGTG
CAGTATCTCCTCGGGTTCAGTGCTTTGTTGGCTCTCCTTTTCCCGCACGA
CTATAGCGTCTCAGAGAGTTGCTCAGGGCTTTCATTCAAGTCCCAGGCGC
TATATTTGATGGTTTTTGTAACGCGTTATCTTGCCGACTTTTCCCATCTT
GCGTCTATATTCATATTATTGCAGAAGATGAAGTCTTCAAGTATGAATAT
CTTCAGGTTATTAGGGTTATGAAGGGTAAGAAGTTCTCATTGCCTGTTTA
AAGCCACTTTCAGCCTATCCCTGTTGTAGCCGGTATCATCCAGACACTCT
TATATTCTGATTTCTTTTATATCTATTACACCAAATTCTTTGGACGTTCT
CTATATGGCTCGAGTCCATTTATTCTGGGCTTTCACGGACTCTTTCTATA
ATACGACTTTTAAAATCCTGTTCATCGGCTCGTCAGCTTATATCATCTAC
CTCATGCTCAACGACTATAAGCCAACGCATGACCCCAACACTGATACCTT
TAAAGTGCAGTATCTCCTCGGGTTCAGTGCTTTGTTGGCTCTCCTTTTCC
CGCACGACTATAGCGTCTCAGAGAGTTGCTCAGGGCTTTCATTCAAGTCC
CAGGCGCTATATTTGATGGTTTTTGTAACGCGTTATCTTGCCGACTTTTC
CCATCTTGCGTCTATATTCATATTATTGCAGAAGATGAAGTCTTCAAGTA
TGAATATCTTCAGGTTATTAGGGTTATGAAGGGTAAGAAGTTCTCATTGC
CTGTTTAAAGCCACTTTCAGCCTATCCCTGTTGTAGCCGGTATCATCCAG
ACACTCTTATATTCTGATTTCTTTTATATCTATTACACCAAATTCTTTGG
ACGTTCTCTATATGGCTCGAGTCCATTTATTCTGGGCTTTCACGGACTCT
TTCTATAATACGACTTTTAAAATCCTGTTCATCGGCTCGTCAGCTTATAT
CATCTACCTCATGCTCAACGACTATAAGCCAACGCATGACCCCAACACTG
ATACCTTTAAAGTGCAGTATCTCCTCGGGTTCAGTGCTTTGTTGGCTCTC
CTTTTCCCGCACGACTATAGCGTCTCAGAGAGTTGCTCAGGGCTTTCATT
CAAGTCCCAGGCGCTATATTTGATGGTTTTTGTAACGCGTTATCTTGCCG
ACTTTTCCCATCTTGCGTCTATATTCATATTATTGCAGAAGATGAAGTCT
TCAAGTATGAATATCTTCAGGTTATTAGGGTTATGAAGGGTAAGAAGTTC
TCATTGCCTGTTTAAAGCCACTTTCAGCCTATCCCTGTTGTAGCCGGTAT
CATCCAGACACTCTTATATTCTGATTTCTTTTATATCTATTACACCAAAT
TCTTTGGACGTTCTCTATATGGCTCGAGTCCATTTATTCTGGGCTTTCAC
GGACTCTTTCTATAATACGACTTTTAAAATCCTGTTCATCGGCTCGTCAG
CTTATATCATCTACCTCATGCTCAACGACTATAAGCCAACGCATGACCCC
AACACTGATACCTTTAAAGTGCAGTATCTCCTCGGGTTCAGTGCTTTGTT
GGCTCTCCTTTTCCCGCACGACTATAGCGTCTCAGAGAGTTGCTCAGGGC
TTTCATTCAAGTCCCAGGCGCTATATTTGATGGTTTTTGTAACGCGTTAT
CTTGCCGACTTTTCCCATCTTGCGTCTATATTCATATTATTGCAGAAGAT
GAAGTCTTCAAGTATGAATATCTTCAGGTTATTAGGGTTATGAAGGGTAA
GAAGTTCTCATTGCCTGTTTAAAGCCACTTTCAGCCTATCCCTGTTGTAG
CCGGTATCATCCAGACACTCTTATATTCTGATTTCTTTTATATCTATTAC
ACCAAATTCTTTGGACGTTCTCTATATGGCTCGAGTCCATTTATTCTGGG
CTTTCACGGACTCTTTCTATAATACGACTTTTAAAATCCTGTTCATCGGC
TCGTCAGCTTATATCATCTACCTCATGCTCAACGACTATAAGCCAACGCA
TGACCCCAACACTGATACCTTTAAAGTGCAGTATCTCCTCGGGTTCAGTG
CTTTGTTGGCTCTCCTTTTCCCGCACGACTATAGCGTCTCAGAGAGTTGC
TCAGGGCTTTCATTCAAGTCCCAGGCGCTATATTTGATGGTTTTTGTAAC
GCGTTATCTTGCCGACTTTTCCCATCTTGCGTCTATATTCATATTATTGC
AGAAGATGAAGTCTTCAAGTATGAATATCTTCAGGTTATTAGGGTTATGA
AGGGTAAGAAGTTCTCATTGCCTGTTTAAAGCCACTTTCAGCCTATCCCT
GTTGTAGCCGGTATCATCCAGACACTCTTATATTCTGATTTCTTTTATAT
CTATTACACCAAATTCTTTGGACGTTCTCTATATGGCTCGAGTCCATTTA
TTCTGGGCTTTCACGGACTCTTTCTATAATACGACTTTTAAAATCCTGTT
CATCGGCTCGTCAGCTTATATCATCTACCTCATGCTCAACGACTATAAGC
CAACGCATGACCCCAACACTGATACCTTTAAAGTGCAGTATCTCCTCGGG
TTCAGTGCTTTGTTGGCTCTCCTTTTCCCGCACGACTATAGCGTCTCAGA
GAGTTGCTCAGGGCTTTCATTCAAGTCCCAGGCGCTATATTTGATGGTTT
TTGTAACGCGTTATCTTGCCGACTTTTCCCATCTTGCGTCTATATTCATA
TTATTGCAGAAGATGAAGTCTTCAAGTATGAATATCTTCAGGTTATTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0046923ER retention sequence binding
Vocabulary: Biological Process
TermDefinition
GO:0006621protein retention in ER lumen
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56861ASPNIDRAFT_56861Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56861-T1ASPNIDRAFT_56861-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56861-T1.cdsASPNIDRAFT_56861-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56861-T1.utr3p1ASPNIDRAFT_56861-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56861-T1.exon7ASPNIDRAFT_56861-T1.exon7Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56861-T1.exon6ASPNIDRAFT_56861-T1.exon6Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56861-T1.exon5ASPNIDRAFT_56861-T1.exon5Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56861-T1.exon4ASPNIDRAFT_56861-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56861-T1.exon3ASPNIDRAFT_56861-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56861-T1.exon2ASPNIDRAFT_56861-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_56861-T1.exon1ASPNIDRAFT_56861-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_56861-T1.utr5p1ASPNIDRAFT_56861-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR000133
DBxrefPFAM:PF00810
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000001.1supercontigACJE01000001.1:1635266..1636372 -
Powered by Drupal