You are here

Home

ATCC10864_000876-T1, ATCC10864_000876-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_000876-T1
Unique NameATCC10864_000876-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000019:234376..235504+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_000876-T1 ID=ATCC10864_000876-T1|Name=ATCC10864_000876-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1129bp|location=Sequence derived from alignment at MCQH01000019:234376..235504+ (Aspergillus niger ATCC 10864)
ATGGGTTCGACTTCGACCGTCGCAGACACCCGCTTCAAGCTGAACACCGG
GGCTGAGATCCCTGCTCTCGGACTCGGTATGATACATCTTCAGATAGTAA
CCACAAGGATATTCTGGCTAACGTCTGTGCAGGAACCTGGCAGTCAGGCC
CTGGAGAGGTCGAAAAGGCCGTGGCACATGCCATCTCCGTTGGATACAGA
CACATTGATACCGCTTTTGCTTACGGAAACGAAGGAGAAGTCGGCAAGGG
TATCAAGGCAGCCATCGAGTCTGGAGTTGTCAAGCGAGAGGACCTCTTTG
TCACAACTAAGCTCTGGAGCACATGGCACTACCGAGTGGAACAGGCTCTG
GACCAGAGCTTGAAGAACTTGGGGCTGGACTATGTTGATCTCTACCTGGT
CCACTGGCCGGTGGCTATGAACCCTAATGGTGAGTCCTCCACTAATTTAG
ACTCAAGGCGATGCGCATGTTGACATTACAAAGGAAACCACCCCAATATT
CCCACCCTTCCCGACGGTTCCCGCGACCTGCACCTCAACCACTCCCATAT
CAACACTTGGAAGGATATGGAGAAGCTTGTCGGTAGCGGAAAGACCAAGG
CCATTGGTGTTTGCAACTACAGCAGGCCCTACCTTGAGGAGCTCCTCGCC
CAAGCCACCGTGGTCCCGGCTGTCAACCAGATTGAGAACCACCCCTGCCT
TCCCCAGCAGGAGGCGGTCGACTTCTGCAAGGAGAAGGGCATTCACATCA
CGGCATACAGCCCTCTCGGCAGCACGGGCAGTCCGCTGCTGACAGCAGAG
CCCATTGTCGAGGTTGCGAAGAAGAAGGGTGTCGACCCAGCCACGGTCCT
GCTGAGCTGGCACAGTACGTATCTTCCATGCCGAATAATGCGAGAATTAT
CACTAACTGCATCCTCCGTGTAGTCAGCCGTGGCTCTTCCGTCCTTGCCA
AGTCTGTGAACCCCTCTCGGATTGAGGGCAACCGCAACCTGGTGGCATTG
GATGATGCTGATATGGCTACCATTGCCAAATACACGAATGACCTGGCCTC
GAAGAACGCCTTTCAGCGTTTTGTTTTCCCTCCTTTCAAGCTTGACTTCG
GATTCCCGGACAAGATCGGCCGCGTATAA
back to top

Coding sequence (CDS) from alignment at MCQH01000019:234376..235504+

>ATCC10864_000876-T1 ID=ATCC10864_000876-T1|Name=ATCC10864_000876-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3840bp|location=Sequence derived from alignment at MCQH01000019:234376..235504+ (Aspergillus niger ATCC 10864)
ATGGGTTCGACTTCGACCGTCGCAGACACCCGCTTCAAGCTGAACACCGG
GGCTGAGATCCCTGCTCTCGGACTCGGAACCTGGCAGTCAGGCCCTGGAG
AGGTCGAAAAGGCCGTGGCACATGCCATCTCCGTTGGATACAGACACATT
GATACCGCTTTTGCTTACGGAAACGAAGGAGAAGTCGGCAAGGGTATCAA
GGCAGCCATCGAGTCTGGAGTTGTCAAGCGAGAGGACCTCTTTGTCACAA
CTAAGCTCTGGAGCACATGGCACTACCGAGTGGAACAGGCTCTGGACCAG
AGCTTGAAGAACTTGGGGCTGGACTATGTTGATCTCTACCTGGTCCACTG
GCCGGTGGCTATGAACCCTAATGGAAACCACCCCAATATTCCCACCCTTC
CCGACGGTTCCCGCGACCTGCACCTCAACCACTCCCATATCAACACTTGG
AAGGATATGGAGAAGCTTGTCGGTAGCGGAAAGACCAAGGCCATTGGTGT
TTGCAACTACAGCAGGCCCTACCTTGAGGAGCTCCTCGCCCAAGCCACCG
TGGTCCCGGCTGTCAACCAGATTGAGAACCACCCCTGCCTTCCCCAGCAG
GAGGCGGTCGACTTCTGCAAGGAGAAGGGCATTCACATCACGGCATACAG
CCCTCTCGGCAGCACGGGCAGTCCGCTGCTGACAGCAGAGCCCATTGTCG
AGGTTGCGAAGAAGAAGGGTGTCGACCCAGCCACGGTCCTGCTGAGCTGG
CACATCAGCCGTGGCTCTTCCGTCCTTGCCAAGTCTGTGAACCCCTCTCG
GATTGAGGGCAACCGCAACCTGGTGGCATTGGATGATGCTGATATGGCTA
CCATTGCCAAATACACGAATGACCTGGCCTCGAAGAACGCCTTTCAGCGT
TTTGTTTTCCCTCCTTTCAAGCTTGACTTCGGATTCCCGGACAAGATCGG
CCGCGTATAAATGGGTTCGACTTCGACCGTCGCAGACACCCGCTTCAAGC
TGAACACCGGGGCTGAGATCCCTGCTCTCGGACTCGGAACCTGGCAGTCA
GGCCCTGGAGAGGTCGAAAAGGCCGTGGCACATGCCATCTCCGTTGGATA
CAGACACATTGATACCGCTTTTGCTTACGGAAACGAAGGAGAAGTCGGCA
AGGGTATCAAGGCAGCCATCGAGTCTGGAGTTGTCAAGCGAGAGGACCTC
TTTGTCACAACTAAGCTCTGGAGCACATGGCACTACCGAGTGGAACAGGC
TCTGGACCAGAGCTTGAAGAACTTGGGGCTGGACTATGTTGATCTCTACC
TGGTCCACTGGCCGGTGGCTATGAACCCTAATGGAAACCACCCCAATATT
CCCACCCTTCCCGACGGTTCCCGCGACCTGCACCTCAACCACTCCCATAT
CAACACTTGGAAGGATATGGAGAAGCTTGTCGGTAGCGGAAAGACCAAGG
CCATTGGTGTTTGCAACTACAGCAGGCCCTACCTTGAGGAGCTCCTCGCC
CAAGCCACCGTGGTCCCGGCTGTCAACCAGATTGAGAACCACCCCTGCCT
TCCCCAGCAGGAGGCGGTCGACTTCTGCAAGGAGAAGGGCATTCACATCA
CGGCATACAGCCCTCTCGGCAGCACGGGCAGTCCGCTGCTGACAGCAGAG
CCCATTGTCGAGGTTGCGAAGAAGAAGGGTGTCGACCCAGCCACGGTCCT
GCTGAGCTGGCACATCAGCCGTGGCTCTTCCGTCCTTGCCAAGTCTGTGA
ACCCCTCTCGGATTGAGGGCAACCGCAACCTGGTGGCATTGGATGATGCT
GATATGGCTACCATTGCCAAATACACGAATGACCTGGCCTCGAAGAACGC
CTTTCAGCGTTTTGTTTTCCCTCCTTTCAAGCTTGACTTCGGATTCCCGG
ACAAGATCGGCCGCGTATAAATGGGTTCGACTTCGACCGTCGCAGACACC
CGCTTCAAGCTGAACACCGGGGCTGAGATCCCTGCTCTCGGACTCGGAAC
CTGGCAGTCAGGCCCTGGAGAGGTCGAAAAGGCCGTGGCACATGCCATCT
CCGTTGGATACAGACACATTGATACCGCTTTTGCTTACGGAAACGAAGGA
GAAGTCGGCAAGGGTATCAAGGCAGCCATCGAGTCTGGAGTTGTCAAGCG
AGAGGACCTCTTTGTCACAACTAAGCTCTGGAGCACATGGCACTACCGAG
TGGAACAGGCTCTGGACCAGAGCTTGAAGAACTTGGGGCTGGACTATGTT
GATCTCTACCTGGTCCACTGGCCGGTGGCTATGAACCCTAATGGAAACCA
CCCCAATATTCCCACCCTTCCCGACGGTTCCCGCGACCTGCACCTCAACC
ACTCCCATATCAACACTTGGAAGGATATGGAGAAGCTTGTCGGTAGCGGA
AAGACCAAGGCCATTGGTGTTTGCAACTACAGCAGGCCCTACCTTGAGGA
GCTCCTCGCCCAAGCCACCGTGGTCCCGGCTGTCAACCAGATTGAGAACC
ACCCCTGCCTTCCCCAGCAGGAGGCGGTCGACTTCTGCAAGGAGAAGGGC
ATTCACATCACGGCATACAGCCCTCTCGGCAGCACGGGCAGTCCGCTGCT
GACAGCAGAGCCCATTGTCGAGGTTGCGAAGAAGAAGGGTGTCGACCCAG
CCACGGTCCTGCTGAGCTGGCACATCAGCCGTGGCTCTTCCGTCCTTGCC
AAGTCTGTGAACCCCTCTCGGATTGAGGGCAACCGCAACCTGGTGGCATT
GGATGATGCTGATATGGCTACCATTGCCAAATACACGAATGACCTGGCCT
CGAAGAACGCCTTTCAGCGTTTTGTTTTCCCTCCTTTCAAGCTTGACTTC
GGATTCCCGGACAAGATCGGCCGCGTATAAATGGGTTCGACTTCGACCGT
CGCAGACACCCGCTTCAAGCTGAACACCGGGGCTGAGATCCCTGCTCTCG
GACTCGGAACCTGGCAGTCAGGCCCTGGAGAGGTCGAAAAGGCCGTGGCA
CATGCCATCTCCGTTGGATACAGACACATTGATACCGCTTTTGCTTACGG
AAACGAAGGAGAAGTCGGCAAGGGTATCAAGGCAGCCATCGAGTCTGGAG
TTGTCAAGCGAGAGGACCTCTTTGTCACAACTAAGCTCTGGAGCACATGG
CACTACCGAGTGGAACAGGCTCTGGACCAGAGCTTGAAGAACTTGGGGCT
GGACTATGTTGATCTCTACCTGGTCCACTGGCCGGTGGCTATGAACCCTA
ATGGAAACCACCCCAATATTCCCACCCTTCCCGACGGTTCCCGCGACCTG
CACCTCAACCACTCCCATATCAACACTTGGAAGGATATGGAGAAGCTTGT
CGGTAGCGGAAAGACCAAGGCCATTGGTGTTTGCAACTACAGCAGGCCCT
ACCTTGAGGAGCTCCTCGCCCAAGCCACCGTGGTCCCGGCTGTCAACCAG
ATTGAGAACCACCCCTGCCTTCCCCAGCAGGAGGCGGTCGACTTCTGCAA
GGAGAAGGGCATTCACATCACGGCATACAGCCCTCTCGGCAGCACGGGCA
GTCCGCTGCTGACAGCAGAGCCCATTGTCGAGGTTGCGAAGAAGAAGGGT
GTCGACCCAGCCACGGTCCTGCTGAGCTGGCACATCAGCCGTGGCTCTTC
CGTCCTTGCCAAGTCTGTGAACCCCTCTCGGATTGAGGGCAACCGCAACC
TGGTGGCATTGGATGATGCTGATATGGCTACCATTGCCAAATACACGAAT
GACCTGGCCTCGAAGAACGCCTTTCAGCGTTTTGTTTTCCCTCCTTTCAA
GCTTGACTTCGGATTCCCGGACAAGATCGGCCGCGTATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0047834D-threo-aldose 1-dehydrogenase activity
GO:0016491oxidoreductase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
GAR1_1ATCC10864_000876Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_000876-T1.exon1ATCC10864_000876-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_000876-T1.exon2ATCC10864_000876-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_000876-T1.exon3ATCC10864_000876-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_000876-T1.exon4ATCC10864_000876-T1.exon4Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_000876-T1.cdsATCC10864_000876-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_000876-T1ATCC10864_000876-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF00248
InterProIPR018170
InterProIPR023210
InterProIPR036812
InterProIPR020471
Properties
Property NameValue
ProductH/ACA snoRNP pseudouridylase subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000019supercontigMCQH01000019:234376..235504 +
Powered by Drupal