You are here

Home

ATCC10864_001472-T1, ATCC10864_001472-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_001472-T1
Unique NameATCC10864_001472-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000027:528823..530056-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_001472-T1 ID=ATCC10864_001472-T1|Name=ATCC10864_001472-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1234bp|location=Sequence derived from alignment at MCQH01000027:528823..530056- (Aspergillus niger ATCC 10864)
ATGCATTTCCTCCAGAACGCCGTTGTGGCCGCCACTATGGGCGCTGCGCT
GGCCGCCGCTGCTCCTCTCGAGAAGCGCTCCTGCACTTTCACCTCCGCCT
CTGCTGCCAAGTCCGGCAAGTCCTCTTGCTCCACCATCACCCTCGACAAC
ATCGCGGTCCCCGCTGGTGAGACTCTTGACTTGACTGGCCTCAAGAAGGG
TACCACCGTACGTCTTCTCTAGCTCCCATAGTACTCTTCCTACTCCGATT
GGACCAACTAACTCTCTTCCCTCACAGGTCATCTTCGAGGGTGAGACCAC
CTTCGGCTACAAGGAATGGAAGGGTCCCCTGATCTCCATGTCCGGTACCG
ACATCACCGTCAAGCAGGCCTCCGGTGCCAAGATCAACTGCGACGGTGCT
CGCTGGTGGGACGGCAAGGGTAGCAACGGTGGCAAGACCAAGCCCAAGTT
CTTCCAGGCCCACAAGCTCGACCAGTCCAGCATCACCGGCCTGAAGGTCT
ACAACACCCCTGTCCAGGGTTTCAGCATTCTGGCCGACCACCTGACCATC
ACCGATGTGACCATCGACAACTCCGCCGGTACCAGCAAGGGTCACAACAC
CGATGCCTTTGACATTGGCCAGAGTACCTACATCACCATTGACGGTGCCA
CCGTCTACAACCAGGATGACTGCCTGGCCATCAACTCGGGTGAGGTATGT
ATATGTCTTGCCCCATCGCGCTGCCACTGTCCCGTAGCCACACGTGATTA
GAGACTGACTAGAACACAGCACATCACCTTCACCAACGGCTACTGTGATG
GTGGCCACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGTGACAACACC
GTCAACGACGTGACCATCTCCAACTCCAAGGTGCTCAACTCCCAGAACGG
TGTCCGCATCAAGACCATCTACGGCAAGACTGGCACTGTCGAGAACGTCA
AGTTTGAGGACATCACCCTGTCCGACATCAGCAAGTACGGTATTGTCGTT
GAGCAGGACTACGAGAACGGCAGCCCCACCGGCACGCCCACCAACGGTGT
CAAGGTTGAGGACATCACTTTCAAGAAGGTCACCGGCAGCGTCAAGAGCT
CTGGTACTGACATCTACATCCTGTGCGGTTCCGGCAGCTGCTCGAACTGG
ACCTGGAGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAGCAAGTGCAA
GAACGTCCCCTCGGGCGCTTCCTGCAGCGATTAA
back to top

Coding sequence (CDS) from alignment at MCQH01000027:528823..530056-

>ATCC10864_001472-T1 ID=ATCC10864_001472-T1|Name=ATCC10864_001472-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3267bp|location=Sequence derived from alignment at MCQH01000027:528823..530056- (Aspergillus niger ATCC 10864)
CACATCACCTTCACCAACGGCTACTGTGATGGTGGCCACGGTCTCTCCAT
CGGTTCCATCGGTGGCCGCAGTGACAACACCGTCAACGACGTGACCATCT
CCAACTCCAAGGTGCTCAACTCCCAGAACGGTGTCCGCATCAAGACCATC
TACGGCAAGACTGGCACTGTCGAGAACGTCAAGTTTGAGGACATCACCCT
GTCCGACATCAGCAAGTACGGTATTGTCGTTGAGCAGGACTACGAGAACG
GCAGCCCCACCGGCACGCCCACCAACGGTGTCAAGGTTGAGGACATCACT
TTCAAGAAGGTCACCGGCAGCGTCAAGAGCTCTGGTACTGACATCTACAT
CCTGTGCGGTTCCGGCAGCTGCTCGAACTGGACCTGGAGCGGTGTTGATG
TGACTGGCGGCAAGAAGAGCAGCAAGTGCAAGAACGTCCCCTCGGGCGCT
TCCTGCAGCGATTAAGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAA
GGAATGGAAGGGTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCA
AGCAGGCCTCCGGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGAC
GGCAAGGGTAGCAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCA
CAAGCTCGACCAGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTG
TCCAGGGTTTCAGCATTCTGGCCGACCACCTGACCATCACCGATGTGACC
ATCGACAACTCCGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGA
CATTGGCCAGAGTACCTACATCACCATTGACGGTGCCACCGTCTACAACC
AGGATGACTGCCTGGCCATCAACTCGGGTGAGATGCATTTCCTCCAGAAC
GCCGTTGTGGCCGCCACTATGGGCGCTGCGCTGGCCGCCGCTGCTCCTCT
CGAGAAGCGCTCCTGCACTTTCACCTCCGCCTCTGCTGCCAAGTCCGGCA
AGTCCTCTTGCTCCACCATCACCCTCGACAACATCGCGGTCCCCGCTGGT
GAGACTCTTGACTTGACTGGCCTCAAGAAGGGTACCACCCACATCACCTT
CACCAACGGCTACTGTGATGGTGGCCACGGTCTCTCCATCGGTTCCATCG
GTGGCCGCAGTGACAACACCGTCAACGACGTGACCATCTCCAACTCCAAG
GTGCTCAACTCCCAGAACGGTGTCCGCATCAAGACCATCTACGGCAAGAC
TGGCACTGTCGAGAACGTCAAGTTTGAGGACATCACCCTGTCCGACATCA
GCAAGTACGGTATTGTCGTTGAGCAGGACTACGAGAACGGCAGCCCCACC
GGCACGCCCACCAACGGTGTCAAGGTTGAGGACATCACTTTCAAGAAGGT
CACCGGCAGCGTCAAGAGCTCTGGTACTGACATCTACATCCTGTGCGGTT
CCGGCAGCTGCTCGAACTGGACCTGGAGCGGTGTTGATGTGACTGGCGGC
AAGAAGAGCAGCAAGTGCAAGAACGTCCCCTCGGGCGCTTCCTGCAGCGA
TTAAGTCATCTTCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGAAGG
GTCCCCTGATCTCCATGTCCGGTACCGACATCACCGTCAAGCAGGCCTCC
GGTGCCAAGATCAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGGTAG
CAACGGTGGCAAGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCGACC
AGTCCAGCATCACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGTTTC
AGCATTCTGGCCGACCACCTGACCATCACCGATGTGACCATCGACAACTC
CGCCGGTACCAGCAAGGGTCACAACACCGATGCCTTTGACATTGGCCAGA
GTACCTACATCACCATTGACGGTGCCACCGTCTACAACCAGGATGACTGC
CTGGCCATCAACTCGGGTGAGATGCATTTCCTCCAGAACGCCGTTGTGGC
CGCCACTATGGGCGCTGCGCTGGCCGCCGCTGCTCCTCTCGAGAAGCGCT
CCTGCACTTTCACCTCCGCCTCTGCTGCCAAGTCCGGCAAGTCCTCTTGC
TCCACCATCACCCTCGACAACATCGCGGTCCCCGCTGGTGAGACTCTTGA
CTTGACTGGCCTCAAGAAGGGTACCACCCACATCACCTTCACCAACGGCT
ACTGTGATGGTGGCCACGGTCTCTCCATCGGTTCCATCGGTGGCCGCAGT
GACAACACCGTCAACGACGTGACCATCTCCAACTCCAAGGTGCTCAACTC
CCAGAACGGTGTCCGCATCAAGACCATCTACGGCAAGACTGGCACTGTCG
AGAACGTCAAGTTTGAGGACATCACCCTGTCCGACATCAGCAAGTACGGT
ATTGTCGTTGAGCAGGACTACGAGAACGGCAGCCCCACCGGCACGCCCAC
CAACGGTGTCAAGGTTGAGGACATCACTTTCAAGAAGGTCACCGGCAGCG
TCAAGAGCTCTGGTACTGACATCTACATCCTGTGCGGTTCCGGCAGCTGC
TCGAACTGGACCTGGAGCGGTGTTGATGTGACTGGCGGCAAGAAGAGCAG
CAAGTGCAAGAACGTCCCCTCGGGCGCTTCCTGCAGCGATTAAGTCATCT
TCGAGGGTGAGACCACCTTCGGCTACAAGGAATGGAAGGGTCCCCTGATC
TCCATGTCCGGTACCGACATCACCGTCAAGCAGGCCTCCGGTGCCAAGAT
CAACTGCGACGGTGCTCGCTGGTGGGACGGCAAGGGTAGCAACGGTGGCA
AGACCAAGCCCAAGTTCTTCCAGGCCCACAAGCTCGACCAGTCCAGCATC
ACCGGCCTGAAGGTCTACAACACCCCTGTCCAGGGTTTCAGCATTCTGGC
CGACCACCTGACCATCACCGATGTGACCATCGACAACTCCGCCGGTACCA
GCAAGGGTCACAACACCGATGCCTTTGACATTGGCCAGAGTACCTACATC
ACCATTGACGGTGCCACCGTCTACAACCAGGATGACTGCCTGGCCATCAA
CTCGGGTGAGATGCATTTCCTCCAGAACGCCGTTGTGGCCGCCACTATGG
GCGCTGCGCTGGCCGCCGCTGCTCCTCTCGAGAAGCGCTCCTGCACTTTC
ACCTCCGCCTCTGCTGCCAAGTCCGGCAAGTCCTCTTGCTCCACCATCAC
CCTCGACAACATCGCGGTCCCCGCTGGTGAGACTCTTGACTTGACTGGCC
TCAAGAAGGGTACCACC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC10864_001472ATCC10864_001472Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_001472-T1ATCC10864_001472-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_001472-T1.cdsATCC10864_001472-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_001472-T1.exon3ATCC10864_001472-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_001472-T1.exon2ATCC10864_001472-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_001472-T1.exon1ATCC10864_001472-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR000743
InterProIPR006626
InterProIPR012334
InterProIPR011050
PFAMPF00295
Properties
Property NameValue
NoteCAZy:GH28
NoteSECRETED:SignalP(1-18)
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000027supercontigMCQH01000027:528823..530056 -
Powered by Drupal