|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at MCQH01000027:884384..886533+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC10864_001580-T1 ID=ATCC10864_001580-T1|Name=ATCC10864_001580-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=2150bp|location=Sequence derived from alignment at MCQH01000027:884384..886533+ (Aspergillus niger ATCC 10864)
ATGCCCATGTACGTGTCTCCCACTAATGCTCAATTTCCTCAATTCTGGTC
GTGTCTGCAATAGAAGCATGTTTTCCGCAGTCATACTTGACCGTTGCATC
AGTTGACTCACGTCCACTGACTCTGTATCCAGGCTCAAGGACCCCTCCCA
GAAATACAAGCGCTTTCAGCCCCTCCACCTTCCCGACCGCCAATGGCCCA
ACAAGACCATCGACAACCCGCCCCGGTGGCTGGCCACCGATCTGCGTGAT
GGCAACCAGAGTCTGCCCGACCCTATGGTAAGTTCATTACAGTGTCTAGT
TAGGGGCGAGAAGAATAGCGGGACCCAGCTGACCACTTCTCTCGTGAAAC
ACACAGGATGGGCAACAAAAACTCCGTTTCTTCAAGATGCTCGTCGACAT
TGGTTACAAGGAAATCGAAGTCTCTTTCCCCTCCGCCTCGCAAACCGACT
TCGACTTCACCCGTAGCCTGGTTGAGACTCCCGGTCTGTGCCCCGATGAT
GTCTGGCTCCAGGTCCTCTCCCCCTGCAGAGAAGATCTGATCCGTCGTAC
GGTCGATTCCCTGAAGGGTGCCAAGAAGGCTATTCTGCACATCTACCTGG
CTACCAGCCCCTGCTTCCGTCGCATCGTGTTCAACATGGACAAGCAGAAG
AGTCTGGAGATGGCCGTGCGCTGCACCAAGTATGCTCGCTCAATCACCAA
GGATGACCCGTCGACAGCCGGAACCGAATGGCACTTTGAGTTCTCCCCCG
AGACCTTCTCCGACACCGAGCCCGAGTTCGCTGCTCAAGTCTGTGAAGCC
GTCAAGGCGGCGTGGGAGCCCACGGAGAAGGACCCCATCATCTTCAACCT
GCCGGCTACGGTAGAGATGTCTACCCCCAACGTCTTCGCCGACCAGGTCG
AGTACTTCTGCCGTAATGTCTCCGAGCGCGAGAAGTACGTCGTGTCCATC
CACCCCCACAATGACCGTGGCTGCGCCATTGCCGCCGCCGAACTCGCTCA
GATGGCCGGTGCCCAGCGAGTAGAAGGAACCCTGTTCGGAAACGGCGAGC
GCACGGGTAACGTGGACTTGGTCACCTTGGCTCTCAACTTGTACACCCAG
GGAATCTCCCCCAAGGTGGACTTCTCCGATATCAATGCGGTCATCAAGGT
GGTCGAGGAAAGCAACAAGATCCCCGTCAACGAGAGATGGCCCTATGGTG
GTCAGCTGGTCGTCTGCGCCTTCAGTGGCAGTCACCAGGATGCCATCAAG
AAGGGATTCAAGCTGCGCGAGACCGCCAGCCCCGATGCCAAGTGGGAAAT
TCCCTACCTCCCCTTGGACCCCGAGGACATTGGCCGGAACTACGAGGCCG
TCATCCGTGTCAACTCCCAGAGTGGCAAGGGTGGTGCCGCCTGGGTTATC
CTGCGCAGTCTGGAGCTGGATCTCCCGCGCGCCCTGCAGGTCGAGTTCAG
CAAGATCGTGCAGCGCAGAACCGAAGAAGTCAGCCGCGAGCTGCGCCCCT
CCGAAGTCGTCGAGCTTTTCCAGGAAGCCTACCACCTCAAGTCCAACCCC
CGCTTCAACCTGGTCGACTACAACATCACCACGGATCGTTCGCAGTCGCC
TGCGCCTCCTGAGCCCGGCAAGGCCCTCAACACCAAGAACCTCAAGCGTC
GCTTCACCGGTGTCATCGAAATCGACGGCATCCAGCACGCCATCACCGGT
GTCGGTCCCGGTGCCATCTCCTCCCTGGCCCACGCCCTGGCCACTCTGGG
CATCGATCTCGACGTCGTCGACTACAAGGAGCACTCCATCGGTCTGGGTC
GTGATGTCAAGGCCGCGACGTATATCCAGTGCACTGCGGCAGGCAGCAAG
GAACAAGTCTGGGGTGTTGGTATCCACCAGGATGTGGTCCAGGCTAGTTT
GATCGCCCTGCTCAGCGCCGCCAGCTCCGTATGTTCCCCCGGAACCTATT
CATCTATAAAGAATCACATCCACTAACAGTACTCTCTTGATTAGTTCCTG
ACCAGCCGCTCCGGCTCCCCCGCTCCCTTCCGCCCCATCCGCTCCAACAC
CCTCACCGATGACGACCTCCAAGCTCTGGAAATGCTGAACGGTCCCAGCA
AGCCCAAGGTTGACATTGACGCTCTGACCAAGCAGGCTGAGAGCCAGTAA
back to topCoding sequence (CDS) from alignment at MCQH01000027:884384..886533+ >ATCC10864_001580-T1 ID=ATCC10864_001580-T1|Name=ATCC10864_001580-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=7524bp|location=Sequence derived from alignment at MCQH01000027:884384..886533+ (Aspergillus niger ATCC 10864)
ATGCCCATGCTCAAGGACCCCTCCCAGAAATACAAGCGCTTTCAGCCCCT
CCACCTTCCCGACCGCCAATGGCCCAACAAGACCATCGACAACCCGCCCC
GGTGGCTGGCCACCGATCTGCGTGATGGCAACCAGAGTCTGCCCGACCCT
ATGGATGGGCAACAAAAACTCCGTTTCTTCAAGATGCTCGTCGACATTGG
TTACAAGGAAATCGAAGTCTCTTTCCCCTCCGCCTCGCAAACCGACTTCG
ACTTCACCCGTAGCCTGGTTGAGACTCCCGGTCTGTGCCCCGATGATGTC
TGGCTCCAGGTCCTCTCCCCCTGCAGAGAAGATCTGATCCGTCGTACGGT
CGATTCCCTGAAGGGTGCCAAGAAGGCTATTCTGCACATCTACCTGGCTA
CCAGCCCCTGCTTCCGTCGCATCGTGTTCAACATGGACAAGCAGAAGAGT
CTGGAGATGGCCGTGCGCTGCACCAAGTATGCTCGCTCAATCACCAAGGA
TGACCCGTCGACAGCCGGAACCGAATGGCACTTTGAGTTCTCCCCCGAGA
CCTTCTCCGACACCGAGCCCGAGTTCGCTGCTCAAGTCTGTGAAGCCGTC
AAGGCGGCGTGGGAGCCCACGGAGAAGGACCCCATCATCTTCAACCTGCC
GGCTACGGTAGAGATGTCTACCCCCAACGTCTTCGCCGACCAGGTCGAGT
ACTTCTGCCGTAATGTCTCCGAGCGCGAGAAGTACGTCGTGTCCATCCAC
CCCCACAATGACCGTGGCTGCGCCATTGCCGCCGCCGAACTCGCTCAGAT
GGCCGGTGCCCAGCGAGTAGAAGGAACCCTGTTCGGAAACGGCGAGCGCA
CGGGTAACGTGGACTTGGTCACCTTGGCTCTCAACTTGTACACCCAGGGA
ATCTCCCCCAAGGTGGACTTCTCCGATATCAATGCGGTCATCAAGGTGGT
CGAGGAAAGCAACAAGATCCCCGTCAACGAGAGATGGCCCTATGGTGGTC
AGCTGGTCGTCTGCGCCTTCAGTGGCAGTCACCAGGATGCCATCAAGAAG
GGATTCAAGCTGCGCGAGACCGCCAGCCCCGATGCCAAGTGGGAAATTCC
CTACCTCCCCTTGGACCCCGAGGACATTGGCCGGAACTACGAGGCCGTCA
TCCGTGTCAACTCCCAGAGTGGCAAGGGTGGTGCCGCCTGGGTTATCCTG
CGCAGTCTGGAGCTGGATCTCCCGCGCGCCCTGCAGGTCGAGTTCAGCAA
GATCGTGCAGCGCAGAACCGAAGAAGTCAGCCGCGAGCTGCGCCCCTCCG
AAGTCGTCGAGCTTTTCCAGGAAGCCTACCACCTCAAGTCCAACCCCCGC
TTCAACCTGGTCGACTACAACATCACCACGGATCGTTCGCAGTCGCCTGC
GCCTCCTGAGCCCGGCAAGGCCCTCAACACCAAGAACCTCAAGCGTCGCT
TCACCGGTGTCATCGAAATCGACGGCATCCAGCACGCCATCACCGGTGTC
GGTCCCGGTGCCATCTCCTCCCTGGCCCACGCCCTGGCCACTCTGGGCAT
CGATCTCGACGTCGTCGACTACAAGGAGCACTCCATCGGTCTGGGTCGTG
ATGTCAAGGCCGCGACGTATATCCAGTGCACTGCGGCAGGCAGCAAGGAA
CAAGTCTGGGGTGTTGGTATCCACCAGGATGTGGTCCAGGCTAGTTTGAT
CGCCCTGCTCAGCGCCGCCAGCTCCTTCCTGACCAGCCGCTCCGGCTCCC
CCGCTCCCTTCCGCCCCATCCGCTCCAACACCCTCACCGATGACGACCTC
CAAGCTCTGGAAATGCTGAACGGTCCCAGCAAGCCCAAGGTTGACATTGA
CGCTCTGACCAAGCAGGCTGAGAGCCAGTAAATGCCCATGCTCAAGGACC
CCTCCCAGAAATACAAGCGCTTTCAGCCCCTCCACCTTCCCGACCGCCAA
TGGCCCAACAAGACCATCGACAACCCGCCCCGGTGGCTGGCCACCGATCT
GCGTGATGGCAACCAGAGTCTGCCCGACCCTATGGATGGGCAACAAAAAC
TCCGTTTCTTCAAGATGCTCGTCGACATTGGTTACAAGGAAATCGAAGTC
TCTTTCCCCTCCGCCTCGCAAACCGACTTCGACTTCACCCGTAGCCTGGT
TGAGACTCCCGGTCTGTGCCCCGATGATGTCTGGCTCCAGGTCCTCTCCC
CCTGCAGAGAAGATCTGATCCGTCGTACGGTCGATTCCCTGAAGGGTGCC
AAGAAGGCTATTCTGCACATCTACCTGGCTACCAGCCCCTGCTTCCGTCG
CATCGTGTTCAACATGGACAAGCAGAAGAGTCTGGAGATGGCCGTGCGCT
GCACCAAGTATGCTCGCTCAATCACCAAGGATGACCCGTCGACAGCCGGA
ACCGAATGGCACTTTGAGTTCTCCCCCGAGACCTTCTCCGACACCGAGCC
CGAGTTCGCTGCTCAAGTCTGTGAAGCCGTCAAGGCGGCGTGGGAGCCCA
CGGAGAAGGACCCCATCATCTTCAACCTGCCGGCTACGGTAGAGATGTCT
ACCCCCAACGTCTTCGCCGACCAGGTCGAGTACTTCTGCCGTAATGTCTC
CGAGCGCGAGAAGTACGTCGTGTCCATCCACCCCCACAATGACCGTGGCT
GCGCCATTGCCGCCGCCGAACTCGCTCAGATGGCCGGTGCCCAGCGAGTA
GAAGGAACCCTGTTCGGAAACGGCGAGCGCACGGGTAACGTGGACTTGGT
CACCTTGGCTCTCAACTTGTACACCCAGGGAATCTCCCCCAAGGTGGACT
TCTCCGATATCAATGCGGTCATCAAGGTGGTCGAGGAAAGCAACAAGATC
CCCGTCAACGAGAGATGGCCCTATGGTGGTCAGCTGGTCGTCTGCGCCTT
CAGTGGCAGTCACCAGGATGCCATCAAGAAGGGATTCAAGCTGCGCGAGA
CCGCCAGCCCCGATGCCAAGTGGGAAATTCCCTACCTCCCCTTGGACCCC
GAGGACATTGGCCGGAACTACGAGGCCGTCATCCGTGTCAACTCCCAGAG
TGGCAAGGGTGGTGCCGCCTGGGTTATCCTGCGCAGTCTGGAGCTGGATC
TCCCGCGCGCCCTGCAGGTCGAGTTCAGCAAGATCGTGCAGCGCAGAACC
GAAGAAGTCAGCCGCGAGCTGCGCCCCTCCGAAGTCGTCGAGCTTTTCCA
GGAAGCCTACCACCTCAAGTCCAACCCCCGCTTCAACCTGGTCGACTACA
ACATCACCACGGATCGTTCGCAGTCGCCTGCGCCTCCTGAGCCCGGCAAG
GCCCTCAACACCAAGAACCTCAAGCGTCGCTTCACCGGTGTCATCGAAAT
CGACGGCATCCAGCACGCCATCACCGGTGTCGGTCCCGGTGCCATCTCCT
CCCTGGCCCACGCCCTGGCCACTCTGGGCATCGATCTCGACGTCGTCGAC
TACAAGGAGCACTCCATCGGTCTGGGTCGTGATGTCAAGGCCGCGACGTA
TATCCAGTGCACTGCGGCAGGCAGCAAGGAACAAGTCTGGGGTGTTGGTA
TCCACCAGGATGTGGTCCAGGCTAGTTTGATCGCCCTGCTCAGCGCCGCC
AGCTCCTTCCTGACCAGCCGCTCCGGCTCCCCCGCTCCCTTCCGCCCCAT
CCGCTCCAACACCCTCACCGATGACGACCTCCAAGCTCTGGAAATGCTGA
ACGGTCCCAGCAAGCCCAAGGTTGACATTGACGCTCTGACCAAGCAGGCT
GAGAGCCAGTAAATGCCCATGCTCAAGGACCCCTCCCAGAAATACAAGCG
CTTTCAGCCCCTCCACCTTCCCGACCGCCAATGGCCCAACAAGACCATCG
ACAACCCGCCCCGGTGGCTGGCCACCGATCTGCGTGATGGCAACCAGAGT
CTGCCCGACCCTATGGATGGGCAACAAAAACTCCGTTTCTTCAAGATGCT
CGTCGACATTGGTTACAAGGAAATCGAAGTCTCTTTCCCCTCCGCCTCGC
AAACCGACTTCGACTTCACCCGTAGCCTGGTTGAGACTCCCGGTCTGTGC
CCCGATGATGTCTGGCTCCAGGTCCTCTCCCCCTGCAGAGAAGATCTGAT
CCGTCGTACGGTCGATTCCCTGAAGGGTGCCAAGAAGGCTATTCTGCACA
TCTACCTGGCTACCAGCCCCTGCTTCCGTCGCATCGTGTTCAACATGGAC
AAGCAGAAGAGTCTGGAGATGGCCGTGCGCTGCACCAAGTATGCTCGCTC
AATCACCAAGGATGACCCGTCGACAGCCGGAACCGAATGGCACTTTGAGT
TCTCCCCCGAGACCTTCTCCGACACCGAGCCCGAGTTCGCTGCTCAAGTC
TGTGAAGCCGTCAAGGCGGCGTGGGAGCCCACGGAGAAGGACCCCATCAT
CTTCAACCTGCCGGCTACGGTAGAGATGTCTACCCCCAACGTCTTCGCCG
ACCAGGTCGAGTACTTCTGCCGTAATGTCTCCGAGCGCGAGAAGTACGTC
GTGTCCATCCACCCCCACAATGACCGTGGCTGCGCCATTGCCGCCGCCGA
ACTCGCTCAGATGGCCGGTGCCCAGCGAGTAGAAGGAACCCTGTTCGGAA
ACGGCGAGCGCACGGGTAACGTGGACTTGGTCACCTTGGCTCTCAACTTG
TACACCCAGGGAATCTCCCCCAAGGTGGACTTCTCCGATATCAATGCGGT
CATCAAGGTGGTCGAGGAAAGCAACAAGATCCCCGTCAACGAGAGATGGC
CCTATGGTGGTCAGCTGGTCGTCTGCGCCTTCAGTGGCAGTCACCAGGAT
GCCATCAAGAAGGGATTCAAGCTGCGCGAGACCGCCAGCCCCGATGCCAA
GTGGGAAATTCCCTACCTCCCCTTGGACCCCGAGGACATTGGCCGGAACT
ACGAGGCCGTCATCCGTGTCAACTCCCAGAGTGGCAAGGGTGGTGCCGCC
TGGGTTATCCTGCGCAGTCTGGAGCTGGATCTCCCGCGCGCCCTGCAGGT
CGAGTTCAGCAAGATCGTGCAGCGCAGAACCGAAGAAGTCAGCCGCGAGC
TGCGCCCCTCCGAAGTCGTCGAGCTTTTCCAGGAAGCCTACCACCTCAAG
TCCAACCCCCGCTTCAACCTGGTCGACTACAACATCACCACGGATCGTTC
GCAGTCGCCTGCGCCTCCTGAGCCCGGCAAGGCCCTCAACACCAAGAACC
TCAAGCGTCGCTTCACCGGTGTCATCGAAATCGACGGCATCCAGCACGCC
ATCACCGGTGTCGGTCCCGGTGCCATCTCCTCCCTGGCCCACGCCCTGGC
CACTCTGGGCATCGATCTCGACGTCGTCGACTACAAGGAGCACTCCATCG
GTCTGGGTCGTGATGTCAAGGCCGCGACGTATATCCAGTGCACTGCGGCA
GGCAGCAAGGAACAAGTCTGGGGTGTTGGTATCCACCAGGATGTGGTCCA
GGCTAGTTTGATCGCCCTGCTCAGCGCCGCCAGCTCCTTCCTGACCAGCC
GCTCCGGCTCCCCCGCTCCCTTCCGCCCCATCCGCTCCAACACCCTCACC
GATGACGACCTCCAAGCTCTGGAAATGCTGAACGGTCCCAGCAAGCCCAA
GGTTGACATTGACGCTCTGACCAAGCAGGCTGAGAGCCAGTAAATGCCCA
TGCTCAAGGACCCCTCCCAGAAATACAAGCGCTTTCAGCCCCTCCACCTT
CCCGACCGCCAATGGCCCAACAAGACCATCGACAACCCGCCCCGGTGGCT
GGCCACCGATCTGCGTGATGGCAACCAGAGTCTGCCCGACCCTATGGATG
GGCAACAAAAACTCCGTTTCTTCAAGATGCTCGTCGACATTGGTTACAAG
GAAATCGAAGTCTCTTTCCCCTCCGCCTCGCAAACCGACTTCGACTTCAC
CCGTAGCCTGGTTGAGACTCCCGGTCTGTGCCCCGATGATGTCTGGCTCC
AGGTCCTCTCCCCCTGCAGAGAAGATCTGATCCGTCGTACGGTCGATTCC
CTGAAGGGTGCCAAGAAGGCTATTCTGCACATCTACCTGGCTACCAGCCC
CTGCTTCCGTCGCATCGTGTTCAACATGGACAAGCAGAAGAGTCTGGAGA
TGGCCGTGCGCTGCACCAAGTATGCTCGCTCAATCACCAAGGATGACCCG
TCGACAGCCGGAACCGAATGGCACTTTGAGTTCTCCCCCGAGACCTTCTC
CGACACCGAGCCCGAGTTCGCTGCTCAAGTCTGTGAAGCCGTCAAGGCGG
CGTGGGAGCCCACGGAGAAGGACCCCATCATCTTCAACCTGCCGGCTACG
GTAGAGATGTCTACCCCCAACGTCTTCGCCGACCAGGTCGAGTACTTCTG
CCGTAATGTCTCCGAGCGCGAGAAGTACGTCGTGTCCATCCACCCCCACA
ATGACCGTGGCTGCGCCATTGCCGCCGCCGAACTCGCTCAGATGGCCGGT
GCCCAGCGAGTAGAAGGAACCCTGTTCGGAAACGGCGAGCGCACGGGTAA
CGTGGACTTGGTCACCTTGGCTCTCAACTTGTACACCCAGGGAATCTCCC
CCAAGGTGGACTTCTCCGATATCAATGCGGTCATCAAGGTGGTCGAGGAA
AGCAACAAGATCCCCGTCAACGAGAGATGGCCCTATGGTGGTCAGCTGGT
CGTCTGCGCCTTCAGTGGCAGTCACCAGGATGCCATCAAGAAGGGATTCA
AGCTGCGCGAGACCGCCAGCCCCGATGCCAAGTGGGAAATTCCCTACCTC
CCCTTGGACCCCGAGGACATTGGCCGGAACTACGAGGCCGTCATCCGTGT
CAACTCCCAGAGTGGCAAGGGTGGTGCCGCCTGGGTTATCCTGCGCAGTC
TGGAGCTGGATCTCCCGCGCGCCCTGCAGGTCGAGTTCAGCAAGATCGTG
CAGCGCAGAACCGAAGAAGTCAGCCGCGAGCTGCGCCCCTCCGAAGTCGT
CGAGCTTTTCCAGGAAGCCTACCACCTCAAGTCCAACCCCCGCTTCAACC
TGGTCGACTACAACATCACCACGGATCGTTCGCAGTCGCCTGCGCCTCCT
GAGCCCGGCAAGGCCCTCAACACCAAGAACCTCAAGCGTCGCTTCACCGG
TGTCATCGAAATCGACGGCATCCAGCACGCCATCACCGGTGTCGGTCCCG
GTGCCATCTCCTCCCTGGCCCACGCCCTGGCCACTCTGGGCATCGATCTC
GACGTCGTCGACTACAAGGAGCACTCCATCGGTCTGGGTCGTGATGTCAA
GGCCGCGACGTATATCCAGTGCACTGCGGCAGGCAGCAAGGAACAAGTCT
GGGGTGTTGGTATCCACCAGGATGTGGTCCAGGCTAGTTTGATCGCCCTG
CTCAGCGCCGCCAGCTCCTTCCTGACCAGCCGCTCCGGCTCCCCCGCTCC
CTTCCGCCCCATCCGCTCCAACACCCTCACCGATGACGACCTCCAAGCTC
TGGAAATGCTGAACGGTCCCAGCAAGCCCAAGGTTGACATTGACGCTCTG
ACCAAGCAGGCTGAGAGCCAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009098 | leucine biosynthetic process |
| GO:0019752 | carboxylic acid metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer |
| GO:0003852 | 2-isopropylmalate synthase activity |
| GO:0003824 | catalytic activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Cross References
External references for this mRNA
| Database | Accession |
|---|
| PFAM | PF08502 |
| InterPro | IPR013709 |
| PFAM | PF00682 |
| InterPro | IPR005668 |
| InterPro | IPR036230 |
| InterPro | IPR000891 |
| InterPro | IPR039371 |
| InterPro | IPR013785 |
| InterPro | IPR002034 |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_1000027.2 |
| Note | SMCOG1271:2-isopropylmalate synthase |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| MCQH01000027 | supercontig | MCQH01000027:884384..886533 + |
|
