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ATCC10864_001582-T1, ATCC10864_001582-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_001582-T1
Unique NameATCC10864_001582-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000027:896477..897452+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_001582-T1 ID=ATCC10864_001582-T1|Name=ATCC10864_001582-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=976bp|location=Sequence derived from alignment at MCQH01000027:896477..897452+ (Aspergillus niger ATCC 10864)
ATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCA
GGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCA
ACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACGTAG
GTGCTTCCCAATCCATCGCGATTTTGATTGTTCTACGAGCATGGGTTTAT
GTCGACCGGTGGAAAAAACGCCATTATCTGTTGGAAGACAGTGGACTCGG
CATGCAGGGAGGAAAACGCACGACAATTCGGGATATCTGCGAAGGGAATC
ACGATGGAAAATTTTATTGCGAAATGGCACAGAAACGAGATATGCTGACT
CGGCTTCATGTTCAATAGCGACTACGTCCAGATCCGCTCCCCTGTCTACC
TTCCTCACTCCGCTGGCCGTTATGCCGCCAAGCGTTTCCGCAAGGCTCAG
TGCCCCATCATCGAGCGCCTGACCAACTCCCTCATGATGAACGGCCGCAA
CAACGGAAAGAAGCTCATGGCTGTCCGCATCGTTGCCCACGCCTTCGAGA
TCGTACGTCACCTATTTTCTGCCCCCATTGCCTTCCGTACGCAGAACGGC
TAGGGTCCGCAAAATCCCAGAACCAGACGCAGAAAGCTGACCGGGTAATC
TTTTCTAGATCCACATCATGACCGACCAGAACCCTCTCCAGGTCGCCGTT
GACGCCATTGTCAACTGCGGTCCTCGCGAAGACAGCACCCGTATCGGTTC
CGCTGGTACCGTCCGTCGTCAGGCCGTCGATGTGTCTCCTCTCCGCCGTG
TCAACCAGGCCATTGCCCTCCTGACCATCGGTGCTCGCGAGGCCTCTTTC
CGTAACATCAAGAGCATTGCTGAGTGCCTGGCTGAAGAGCTCATCAACGC
CGCCAAGGGTTCCTCCAACTCCTATGCCATCAAGAAGAAGGACGAGCTCG
AGCGTGTTGCCAAGTCCAACCGGTAA
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Coding sequence (CDS) from alignment at MCQH01000027:896477..897452+

>ATCC10864_001582-T1 ID=ATCC10864_001582-T1|Name=ATCC10864_001582-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1944bp|location=Sequence derived from alignment at MCQH01000027:896477..897452+ (Aspergillus niger ATCC 10864)
ATGTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCA
GGTCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCA
ACAAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGAC
TACGTCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTA
TGCCGCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGA
CCAACTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCT
GTCCGCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCA
GAACCCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCG
AAGACAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTC
GATGTGTCTCCTCTCCGCCGTGTCAACCAGGCCATTGCCCTCCTGACCAT
CGGTGCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCC
TGGCTGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCC
ATCAAGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAAAT
GTCTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCAGG
TCCTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCAAC
AAGTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGACTA
CGTCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATG
CCGCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACC
AACTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCTGT
CCGCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCAGA
ACCCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAA
GACAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGA
TGTGTCTCCTCTCCGCCGTGTCAACCAGGCCATTGCCCTCCTGACCATCG
GTGCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTG
GCTGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCAT
CAAGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAAATGT
CTGAACACGGCGAAGTCGAGGTCGAAAACCCCGCTGCGGCCTTCCAGGTC
CTGCCCAAGGAGGCTATCGCGGAGATGGGATCCGTGAAGCTGTTCAACAA
GTGGAGCTACGAGGATGTTGAGATCAGGGACATCTCCTTGACCGACTACG
TCCAGATCCGCTCCCCTGTCTACCTTCCTCACTCCGCTGGCCGTTATGCC
GCCAAGCGTTTCCGCAAGGCTCAGTGCCCCATCATCGAGCGCCTGACCAA
CTCCCTCATGATGAACGGCCGCAACAACGGAAAGAAGCTCATGGCTGTCC
GCATCGTTGCCCACGCCTTCGAGATCATCCACATCATGACCGACCAGAAC
CCTCTCCAGGTCGCCGTTGACGCCATTGTCAACTGCGGTCCTCGCGAAGA
CAGCACCCGTATCGGTTCCGCTGGTACCGTCCGTCGTCAGGCCGTCGATG
TGTCTCCTCTCCGCCGTGTCAACCAGGCCATTGCCCTCCTGACCATCGGT
GCTCGCGAGGCCTCTTTCCGTAACATCAAGAGCATTGCTGAGTGCCTGGC
TGAAGAGCTCATCAACGCCGCCAAGGGTTCCTCCAACTCCTATGCCATCA
AGAAGAAGGACGAGCTCGAGCGTGTTGCCAAGTCCAACCGGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS5ATCC10864_001582Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_001582-T1.exon1ATCC10864_001582-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_001582-T1.exon2ATCC10864_001582-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_001582-T1.exon3ATCC10864_001582-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_001582-T1.cdsATCC10864_001582-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_001582-T1ATCC10864_001582-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR005716
InterProIPR036823
PFAMPF00177
InterProIPR023798
InterProIPR020606
InterProIPR000235
Properties
Property NameValue
NoteantiSMASH:Cluster_1000027.2
Productribosomal protein S5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000027supercontigMCQH01000027:896477..897452 +
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