You are here

Home

ATCC10864_001712-T1, ATCC10864_001712-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_001712-T1
Unique NameATCC10864_001712-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000029:193093..193923-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_001712-T1 ID=ATCC10864_001712-T1|Name=ATCC10864_001712-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=831bp|location=Sequence derived from alignment at MCQH01000029:193093..193923- (Aspergillus niger ATCC 10864)
ATGGCTACGGAAGAGAACGAGATCAAGGATGAGCGCCTGCAACACCAGGA
GGAGGCCGGTGATGATGAGGTACGTTTTGACTGCTTGCGCTGAAAACCCA
AAGCTTGATGCTTTCTTTTGCTTGTTTCTTGGCTTGCTTCTATTTGACTT
GGCGATTTGTCTTTCACTGAATCTAGCTAACGTGACCTTCTTTTTTCATG
ACTTATAGGAGGAGATTGCGGCGATGAAGAAACGGGTAGCCGAAATGGAA
TCCGAGGCAGCGAAGCTACGCGAGATGCAAGCCACGCTTGATCAGCAATC
GGAGAACCTGCGTGAGGACAAAGAGGAGATCGACGCTCGGAGTGTCTTCG
TCGGCAACGTGGACTACGGTGCCTCTCCCGAGGAGATTCAGGCACACTTT
CAAAGTTGCGGCTCAATAAACCGTGTCACTATCCTGCTGGACAAGTTCAC
CGGCCAGCCCAAGGGGTATGTTGCAGCGCATTCATTTGACAGGCTGGGGG
GCATCATATGCTGATATGATTTACAGATACGCCTATGTAGAATTTGCGGA
ACCCAGTTTAGTGGCTCAGGCCCTTGTCTTGAACGAGAGTGTCTTCCGCG
GCCGGAACCTGAAGGTAGATCGCATGATAGAGGCCATTGATCGACTGAAT
GATACTAATGCTCGATGCTTTACAGGTCGTTCCCAAGCGTACCAACCTGC
CGGGCATGAGCCGCGGTCGTGGACGAGGTGGATTCCGCGGTGGTGGCCGG
GGGTACCGTGGTGGATTTGCGCCCCGTGGAGGGTATCGCGGTGGCTACCG
TGGCCGGGGTCGCGGCTATGCGCCCTACTAA
back to top

Coding sequence (CDS) from alignment at MCQH01000029:193093..193923-

>ATCC10864_001712-T1 ID=ATCC10864_001712-T1|Name=ATCC10864_001712-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2280bp|location=Sequence derived from alignment at MCQH01000029:193093..193923- (Aspergillus niger ATCC 10864)
GTCGTTCCCAAGCGTACCAACCTGCCGGGCATGAGCCGCGGTCGTGGACG
AGGTGGATTCCGCGGTGGTGGCCGGGGGTACCGTGGTGGATTTGCGCCCC
GTGGAGGGTATCGCGGTGGCTACCGTGGCCGGGGTCGCGGCTATGCGCCC
TACTAAATACGCCTATGTAGAATTTGCGGAACCCAGTTTAGTGGCTCAGG
CCCTTGTCTTGAACGAGAGTGTCTTCCGCGGCCGGAACCTGAAGGAGGAG
ATTGCGGCGATGAAGAAACGGGTAGCCGAAATGGAATCCGAGGCAGCGAA
GCTACGCGAGATGCAAGCCACGCTTGATCAGCAATCGGAGAACCTGCGTG
AGGACAAAGAGGAGATCGACGCTCGGAGTGTCTTCGTCGGCAACGTGGAC
TACGGTGCCTCTCCCGAGGAGATTCAGGCACACTTTCAAAGTTGCGGCTC
AATAAACCGTGTCACTATCCTGCTGGACAAGTTCACCGGCCAGCCCAAGG
GATGGCTACGGAAGAGAACGAGATCAAGGATGAGCGCCTGCAACACCAGG
AGGAGGCCGGTGATGATGAGGTCGTTCCCAAGCGTACCAACCTGCCGGGC
ATGAGCCGCGGTCGTGGACGAGGTGGATTCCGCGGTGGTGGCCGGGGGTA
CCGTGGTGGATTTGCGCCCCGTGGAGGGTATCGCGGTGGCTACCGTGGCC
GGGGTCGCGGCTATGCGCCCTACTAAATACGCCTATGTAGAATTTGCGGA
ACCCAGTTTAGTGGCTCAGGCCCTTGTCTTGAACGAGAGTGTCTTCCGCG
GCCGGAACCTGAAGGAGGAGATTGCGGCGATGAAGAAACGGGTAGCCGAA
ATGGAATCCGAGGCAGCGAAGCTACGCGAGATGCAAGCCACGCTTGATCA
GCAATCGGAGAACCTGCGTGAGGACAAAGAGGAGATCGACGCTCGGAGTG
TCTTCGTCGGCAACGTGGACTACGGTGCCTCTCCCGAGGAGATTCAGGCA
CACTTTCAAAGTTGCGGCTCAATAAACCGTGTCACTATCCTGCTGGACAA
GTTCACCGGCCAGCCCAAGGGATGGCTACGGAAGAGAACGAGATCAAGGA
TGAGCGCCTGCAACACCAGGAGGAGGCCGGTGATGATGAGGTCGTTCCCA
AGCGTACCAACCTGCCGGGCATGAGCCGCGGTCGTGGACGAGGTGGATTC
CGCGGTGGTGGCCGGGGGTACCGTGGTGGATTTGCGCCCCGTGGAGGGTA
TCGCGGTGGCTACCGTGGCCGGGGTCGCGGCTATGCGCCCTACTAAATAC
GCCTATGTAGAATTTGCGGAACCCAGTTTAGTGGCTCAGGCCCTTGTCTT
GAACGAGAGTGTCTTCCGCGGCCGGAACCTGAAGGAGGAGATTGCGGCGA
TGAAGAAACGGGTAGCCGAAATGGAATCCGAGGCAGCGAAGCTACGCGAG
ATGCAAGCCACGCTTGATCAGCAATCGGAGAACCTGCGTGAGGACAAAGA
GGAGATCGACGCTCGGAGTGTCTTCGTCGGCAACGTGGACTACGGTGCCT
CTCCCGAGGAGATTCAGGCACACTTTCAAAGTTGCGGCTCAATAAACCGT
GTCACTATCCTGCTGGACAAGTTCACCGGCCAGCCCAAGGGATGGCTACG
GAAGAGAACGAGATCAAGGATGAGCGCCTGCAACACCAGGAGGAGGCCGG
TGATGATGAGGTCGTTCCCAAGCGTACCAACCTGCCGGGCATGAGCCGCG
GTCGTGGACGAGGTGGATTCCGCGGTGGTGGCCGGGGGTACCGTGGTGGA
TTTGCGCCCCGTGGAGGGTATCGCGGTGGCTACCGTGGCCGGGGTCGCGG
CTATGCGCCCTACTAAATACGCCTATGTAGAATTTGCGGAACCCAGTTTA
GTGGCTCAGGCCCTTGTCTTGAACGAGAGTGTCTTCCGCGGCCGGAACCT
GAAGGAGGAGATTGCGGCGATGAAGAAACGGGTAGCCGAAATGGAATCCG
AGGCAGCGAAGCTACGCGAGATGCAAGCCACGCTTGATCAGCAATCGGAG
AACCTGCGTGAGGACAAAGAGGAGATCGACGCTCGGAGTGTCTTCGTCGG
CAACGTGGACTACGGTGCCTCTCCCGAGGAGATTCAGGCACACTTTCAAA
GTTGCGGCTCAATAAACCGTGTCACTATCCTGCTGGACAAGTTCACCGGC
CAGCCCAAGGGATGGCTACGGAAGAGAACGAGATCAAGGATGAGCGCCTG
CAACACCAGGAGGAGGCCGGTGATGATGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PAB2ATCC10864_001712Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_001712-T1ATCC10864_001712-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_001712-T1.cdsATCC10864_001712-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_001712-T1.exon4ATCC10864_001712-T1.exon4Aspergillus niger ATCC 10864exon
ATCC10864_001712-T1.exon3ATCC10864_001712-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_001712-T1.exon2ATCC10864_001712-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_001712-T1.exon1ATCC10864_001712-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF00076
InterProIPR035979
InterProIPR000504
InterProIPR012677
Properties
Property NameValue
Productpoly(A) binding protein Pab2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000029supercontigMCQH01000029:193093..193923 -
Powered by Drupal