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ATCC10864_002617-T1, ATCC10864_002617-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_002617-T1
Unique NameATCC10864_002617-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000053:311291..313480+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_002617-T1 ID=ATCC10864_002617-T1|Name=ATCC10864_002617-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=2190bp|location=Sequence derived from alignment at MCQH01000053:311291..313480+ (Aspergillus niger ATCC 10864)
ATGGATGCGTTTAAGTTATTGACAAGGTCCACCAAGTTCAAGGCTGGTAA
TTCCCTGTCTTCGACACTGCCTTCCAAAGGCAAGGCCGAGAACCCCCAGC
TTTTCCGTGACGCAGAGGCCGAAAAGCTTCTGGAGTCAAATGCTTTTGGG
AAAAAGAGAAAGCGCACGCAAGCTGCAGGTGATTCAGATGCAGAAGATGG
CAATGCTGGCGATCTAGATTTTTTCGGTTCAGGTAAACGGTCTGCGGCCA
GTGCCCCATCGAAAAAGGATGAAGATGGACCTTCCGAGCAGAAAGATGCA
TCTGACTCCGAAGGCGATGATTCGATGGATGAAGTTGAGCGCCGGACGAT
CTTGAACTCTCACAAGATCAAGGTCACTGATATGCGTGATCTTGAAGAAC
TTCAGCCCACTCAGCCTCAGAAGGAGGAATCTAAGAAGAAAAAGAAGAAG
AGAAAGCAGCAGGAAGAGGAGCCCGCTCAGACGCTCACTAAGAAGGAGCA
GAAGAAAGCCCGGCGGTTGTTTCCGGAGCCCTTGGTCTCCTTTAAACAGC
TGCGTACGAAGTACAATATTTCCCGACGTCTGGCGGAAAACATTGCTGAG
CAAGGCTTTACGGTCCCTACTGAAGTTCAACTAGGAAGTCTTCCTCTTTT
GCTCGGAGACCAATCAGTGCCGCAGAAGTCGGGCACTGAAAAGAGCACCG
AACCGGATCTACTGGTCGTTGCGCCTACAGGAAGTGGCAAGACGCTATCA
TTTATGATCCCGGTGATCAACAAGATTGTCCGGCACCATCACGAAAAGCC
AGAGGAACGGGGCATCTTGTCTGTTGTAATTGCTCCGACGAAAGAGCTTG
CTAGCCAAATCGTCAACGAAGGCCGAAAGTTAGCTTTGGGAACTGGTGTG
AAGATCACTTTGATGAAGAAGGGCATGCGTGTGGTAGAGCGTGATGATGA
AGACGATAGCAAAGACGTCCTGGATGAAGATGATTCGGAATCGTCGGGCT
CTGAAGATGATGAAAAGGCCACAGCAAAGAACAGCAAAGGGAAGGCGCCG
GTTACCAAGAGCGACATCCTTGTAACAACACCATTGCTTCTTGTTAACGC
GCTTTCTGCAAACCGGACAAAACCGTTGGCGACTCTCCCTCTTGTGAGAA
ATGTGGTTCTGGATGAGGCGGATGTTCTCCTGGATCCTCTGTTCCGTGAC
CAAACACTTGACATCTGGCGCTCCTGCACGCATCCTGAGCTTCGAGCAAG
TCTCTGGTCAGCGACGATGGGGTCAAATGTCGAAGACCTCGCTAAGTCAA
CGATCAAGGAGCGGAAAGATACTCTAAGCGAGACCAAGTCTTATCCGCTA
CTCCGTTTGGTGGTTGGCCTCAAGGACTCTGCTATTCCAAACATCAAGCA
CAAGCTGGTTTATGCTGCCACTGAGCAAGGAAAGTTGCTCGGTCTTCGGC
AGCTTTTGCACCCCGCCGCAGCATCATCAACGGACATTCGTTTACGCCCA
CCTTTCTTGATCTTTACTCAGACGATTCCCAGAGCGGTTGCGTTACATTC
AGAACTGCGCTACGATATCCCTCCCGAGGCGGGTGGCTCGTCACGTATAG
CTGTCCTCCACTCTGAGTTATCGGACGGCCAACGTTCCGAGATCATGAAG
CAATTCCGGAAGGGTGAAATTTGGATTCTGGTCACCACGGATCTTTTGGC
CCGTGGTGTTGACTTCAGAGGCATTAACGGGGTTGTTAACTACGACATCC
CGAACTCCGCTGCTGTCTACGTCCACCGTGTTGGACGGACGGGCAGAGCT
GGCCGTGAAGGTGGCATTGCAGTCACATACTACACCAAGGAGGATATCCC
TTATGTCAAGAGCATTGCCAATGTAATTGACGTCAGCGAGAAGTTACGGG
GTACAGATGAGGAGAAGTCTGTACAGAAGTGGCTGTTGGACGCTCTTCCG
GACCTCAGCAAGAAGAAGAAGGAGGAGCTCAAGAAGCACGGCGTCAAGGC
CAGGCAGACCCAAGGCACCAAAGACGACAAGAAGACAAGAATTAGCACCA
AGAGTGGTTACGAGCGACGCCAGGAGAACAAGAAGAAGGCTCTCATCTCA
GCCAGCCGCAATAGGAAATCTCAACCAAAGTCAGGCGCAGACTCTGGCAG
TGACGACGACAATCAGGGCTGGCAAGGACTCGAGGACTAG
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Coding sequence (CDS) from alignment at MCQH01000053:311291..313480+

>ATCC10864_002617-T1 ID=ATCC10864_002617-T1|Name=ATCC10864_002617-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2190bp|location=Sequence derived from alignment at MCQH01000053:311291..313480+ (Aspergillus niger ATCC 10864)
ATGGATGCGTTTAAGTTATTGACAAGGTCCACCAAGTTCAAGGCTGGTAA
TTCCCTGTCTTCGACACTGCCTTCCAAAGGCAAGGCCGAGAACCCCCAGC
TTTTCCGTGACGCAGAGGCCGAAAAGCTTCTGGAGTCAAATGCTTTTGGG
AAAAAGAGAAAGCGCACGCAAGCTGCAGGTGATTCAGATGCAGAAGATGG
CAATGCTGGCGATCTAGATTTTTTCGGTTCAGGTAAACGGTCTGCGGCCA
GTGCCCCATCGAAAAAGGATGAAGATGGACCTTCCGAGCAGAAAGATGCA
TCTGACTCCGAAGGCGATGATTCGATGGATGAAGTTGAGCGCCGGACGAT
CTTGAACTCTCACAAGATCAAGGTCACTGATATGCGTGATCTTGAAGAAC
TTCAGCCCACTCAGCCTCAGAAGGAGGAATCTAAGAAGAAAAAGAAGAAG
AGAAAGCAGCAGGAAGAGGAGCCCGCTCAGACGCTCACTAAGAAGGAGCA
GAAGAAAGCCCGGCGGTTGTTTCCGGAGCCCTTGGTCTCCTTTAAACAGC
TGCGTACGAAGTACAATATTTCCCGACGTCTGGCGGAAAACATTGCTGAG
CAAGGCTTTACGGTCCCTACTGAAGTTCAACTAGGAAGTCTTCCTCTTTT
GCTCGGAGACCAATCAGTGCCGCAGAAGTCGGGCACTGAAAAGAGCACCG
AACCGGATCTACTGGTCGTTGCGCCTACAGGAAGTGGCAAGACGCTATCA
TTTATGATCCCGGTGATCAACAAGATTGTCCGGCACCATCACGAAAAGCC
AGAGGAACGGGGCATCTTGTCTGTTGTAATTGCTCCGACGAAAGAGCTTG
CTAGCCAAATCGTCAACGAAGGCCGAAAGTTAGCTTTGGGAACTGGTGTG
AAGATCACTTTGATGAAGAAGGGCATGCGTGTGGTAGAGCGTGATGATGA
AGACGATAGCAAAGACGTCCTGGATGAAGATGATTCGGAATCGTCGGGCT
CTGAAGATGATGAAAAGGCCACAGCAAAGAACAGCAAAGGGAAGGCGCCG
GTTACCAAGAGCGACATCCTTGTAACAACACCATTGCTTCTTGTTAACGC
GCTTTCTGCAAACCGGACAAAACCGTTGGCGACTCTCCCTCTTGTGAGAA
ATGTGGTTCTGGATGAGGCGGATGTTCTCCTGGATCCTCTGTTCCGTGAC
CAAACACTTGACATCTGGCGCTCCTGCACGCATCCTGAGCTTCGAGCAAG
TCTCTGGTCAGCGACGATGGGGTCAAATGTCGAAGACCTCGCTAAGTCAA
CGATCAAGGAGCGGAAAGATACTCTAAGCGAGACCAAGTCTTATCCGCTA
CTCCGTTTGGTGGTTGGCCTCAAGGACTCTGCTATTCCAAACATCAAGCA
CAAGCTGGTTTATGCTGCCACTGAGCAAGGAAAGTTGCTCGGTCTTCGGC
AGCTTTTGCACCCCGCCGCAGCATCATCAACGGACATTCGTTTACGCCCA
CCTTTCTTGATCTTTACTCAGACGATTCCCAGAGCGGTTGCGTTACATTC
AGAACTGCGCTACGATATCCCTCCCGAGGCGGGTGGCTCGTCACGTATAG
CTGTCCTCCACTCTGAGTTATCGGACGGCCAACGTTCCGAGATCATGAAG
CAATTCCGGAAGGGTGAAATTTGGATTCTGGTCACCACGGATCTTTTGGC
CCGTGGTGTTGACTTCAGAGGCATTAACGGGGTTGTTAACTACGACATCC
CGAACTCCGCTGCTGTCTACGTCCACCGTGTTGGACGGACGGGCAGAGCT
GGCCGTGAAGGTGGCATTGCAGTCACATACTACACCAAGGAGGATATCCC
TTATGTCAAGAGCATTGCCAATGTAATTGACGTCAGCGAGAAGTTACGGG
GTACAGATGAGGAGAAGTCTGTACAGAAGTGGCTGTTGGACGCTCTTCCG
GACCTCAGCAAGAAGAAGAAGGAGGAGCTCAAGAAGCACGGCGTCAAGGC
CAGGCAGACCCAAGGCACCAAAGACGACAAGAAGACAAGAATTAGCACCA
AGAGTGGTTACGAGCGACGCCAGGAGAACAAGAAGAAGGCTCTCATCTCA
GCCAGCCGCAATAGGAAATCTCAACCAAAGTCAGGCGCAGACTCTGGCAG
TGACGACGACAATCAGGGCTGGCAAGGACTCGAGGACTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0030490maturation of SSU-rRNA
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003676nucleic acid binding
GO:0003724RNA helicase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ROK1ATCC10864_002617Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_002617-T1.exon1ATCC10864_002617-T1.exon1Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_002617-T1.cdsATCC10864_002617-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_002617-T1ATCC10864_002617-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF00270
InterProIPR044764
PFAMPF00271
PFAMPF04851
InterProIPR014014
InterProIPR001650
InterProIPR027417
InterProIPR011545
InterProIPR014001
Properties
Property NameValue
ProductRNA-dependent ATPase rok1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000053supercontigMCQH01000053:311291..313480 +
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