You are here

Home

ATCC10864_003416-T1, ATCC10864_003416-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_003416-T1
Unique NameATCC10864_003416-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000066:1085447..1086204+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_003416-T1 ID=ATCC10864_003416-T1|Name=ATCC10864_003416-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=758bp|location=Sequence derived from alignment at MCQH01000066:1085447..1086204+ (Aspergillus niger ATCC 10864)
ATGGATTCCCCTTCGCCCCAGGGCCCCTCGGCCCAAAACTCACCCAAACC
CGACCAGGCCAAACTCGCTCACAGGCCAGCCAATCGTAAACAATCTTCTG
ATTCTTCCTCGAATACCCAAAATGCACCTATACCAGACGACAAGCACGGT
GCGGACTTACCAATGACCATGTCCGCCTCGGTGGTGCTAACCAGCTTACC
CCGCGATGCCCACCAAGCATTGGCGGATGCTGAGGCTGTCGATAGGGGCA
AAGGCAAGTAAAACCCTCTGGTCATCATCTACTACGAGTGCTATCACGTA
TCCACTGCCTCGAATTGTTTGGAATACTTTCTCGCTCGAAAGTCAGCTTT
TTCCGAGCTCCAAACTGGCCCCTCACTTTCCTAGTAACGTCATGTGGCTT
ATCGGGACAAGCCATATACTTGTCCGAAAACTAACGGTGCAGCAGTTACC
GTGCGCTTTCAGCCACTGCCTTCAGCTCCCATCCTGAAGAACCGCGTGTT
CAAGATTAGTGCCTCGCAAAAGTTCGAAACAGTCGTAAAATTTCTCAGGA
AGAAGCTCGACTGTAAAGAATCCGACTCGGTTTTCTGTTATGTCAACAGT
GTATTTGCCCCTGGGTTAGACGAAGGTGTTGGTGGGTTGTGGAGGGTAAG
CCGCCTTGATACGTGGATTTGAGCCACCCATTTACTGACAGCATTCAGTG
TTTCAAGAGTGACGAGCAACTTATCGTTGCTTACTCTATGACGCCCGCTT
TTGGCTGA
back to top

Coding sequence (CDS) from alignment at MCQH01000066:1085447..1086204+

>ATCC10864_003416-T1 ID=ATCC10864_003416-T1|Name=ATCC10864_003416-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1539bp|location=Sequence derived from alignment at MCQH01000066:1085447..1086204+ (Aspergillus niger ATCC 10864)
ATGGATTCCCCTTCGCCCCAGGGCCCCTCGGCCCAAAACTCACCCAAACC
CGACCAGGCCAAACTCGCTCACAGGCCAGCCAATCGTAAACAATCTTCTG
ATTCTTCCTCGAATACCCAAAATGCACCTATACCAGACGACAAGCACGGT
GCGGACTTACCAATGACCATGTCCGCCTCGGTGGTGCTAACCAGCTTACC
CCGCGATGCCCACCAAGCATTGGCGGATGCTGAGGCTGTCGATAGGGGCA
AAGTTACCGTGCGCTTTCAGCCACTGCCTTCAGCTCCCATCCTGAAGAAC
CGCGTGTTCAAGATTAGTGCCTCGCAAAAGTTCGAAACAGTCGTAAAATT
TCTCAGGAAGAAGCTCGACTGTAAAGAATCCGACTCGGTTTTCTGTTATG
TCAACAGTGTATTTGCCCCTGGGTTAGACGAAGGTGTTGGTGGGTTGTGG
AGGTGTTTCAAGAGTGACGAGCAACTTATCGTTGCTTACTCTATGACGCC
CGCTTTTGGCTGAATGGATTCCCCTTCGCCCCAGGGCCCCTCGGCCCAAA
ACTCACCCAAACCCGACCAGGCCAAACTCGCTCACAGGCCAGCCAATCGT
AAACAATCTTCTGATTCTTCCTCGAATACCCAAAATGCACCTATACCAGA
CGACAAGCACGGTGCGGACTTACCAATGACCATGTCCGCCTCGGTGGTGC
TAACCAGCTTACCCCGCGATGCCCACCAAGCATTGGCGGATGCTGAGGCT
GTCGATAGGGGCAAAGTTACCGTGCGCTTTCAGCCACTGCCTTCAGCTCC
CATCCTGAAGAACCGCGTGTTCAAGATTAGTGCCTCGCAAAAGTTCGAAA
CAGTCGTAAAATTTCTCAGGAAGAAGCTCGACTGTAAAGAATCCGACTCG
GTTTTCTGTTATGTCAACAGTGTATTTGCCCCTGGGTTAGACGAAGGTGT
TGGTGGGTTGTGGAGGTGTTTCAAGAGTGACGAGCAACTTATCGTTGCTT
ACTCTATGACGCCCGCTTTTGGCTGAATGGATTCCCCTTCGCCCCAGGGC
CCCTCGGCCCAAAACTCACCCAAACCCGACCAGGCCAAACTCGCTCACAG
GCCAGCCAATCGTAAACAATCTTCTGATTCTTCCTCGAATACCCAAAATG
CACCTATACCAGACGACAAGCACGGTGCGGACTTACCAATGACCATGTCC
GCCTCGGTGGTGCTAACCAGCTTACCCCGCGATGCCCACCAAGCATTGGC
GGATGCTGAGGCTGTCGATAGGGGCAAAGTTACCGTGCGCTTTCAGCCAC
TGCCTTCAGCTCCCATCCTGAAGAACCGCGTGTTCAAGATTAGTGCCTCG
CAAAAGTTCGAAACAGTCGTAAAATTTCTCAGGAAGAAGCTCGACTGTAA
AGAATCCGACTCGGTTTTCTGTTATGTCAACAGTGTATTTGCCCCTGGGT
TAGACGAAGGTGTTGGTGGGTTGTGGAGGTGTTTCAAGAGTGACGAGCAA
CTTATCGTTGCTTACTCTATGACGCCCGCTTTTGGCTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0000045autophagosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATG12ATCC10864_003416Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_003416-T1.exon1ATCC10864_003416-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_003416-T1.exon2ATCC10864_003416-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_003416-T1.exon3ATCC10864_003416-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_003416-T1.cdsATCC10864_003416-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_003416-T1ATCC10864_003416-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR007242
PFAMPF04110
InterProIPR029071
Properties
Property NameValue
NoteBUSCO:EOG09265EKJ
ProductUbiquitin-like protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000066supercontigMCQH01000066:1085447..1086204 +
Powered by Drupal