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Sequences
The following sequences are available for this feature:
mRNA from alignment at MCQH01000068:51614..52162- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC10864_003595-T1 ID=ATCC10864_003595-T1|Name=ATCC10864_003595-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=549bp|location=Sequence derived from alignment at MCQH01000068:51614..52162- (Aspergillus niger ATCC 10864)
ATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCCTGTACGTCT
ACCACCATACCATTATTATTATCATCATACATATACATGTCTCAATGCGA
TGGATATGGACATGGTATTTATATATATTCAATTGCGACAGTACTAACAA
GCAATTCCTGCTATTATAGAAGGTCCACAAGATCCGTATCACCCTCACCT
CTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTCGGAGCTGATCGACCGT
GCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCGTCCGTCTTCCCACCAA
GACCCTTCACATCTCGACCCGTAAGACCCCCAACGGTGAGGGTTCCAAGA
CCTGGGACAAGTACGAGATGCGCATCCACAAGCGTCTCATCGAGTAAGCA
CCCCCCACCTCCTCCTTTGAAGATGTTGGAAGGGAAAGGATGGAAAGCTA
ATATCTGTGTTCAGCCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCAT
CATCAACATCGAGGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAA back to topCoding sequence (CDS) from alignment at MCQH01000068:51614..52162- >ATCC10864_003595-T1 ID=ATCC10864_003595-T1|Name=ATCC10864_003595-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1053bp|location=Sequence derived from alignment at MCQH01000068:51614..52162- (Aspergillus niger ATCC 10864)
CCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAGG
CTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGATC
CGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCTC
GGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCCG
TCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAAC
GGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGCG
TCTCATCGAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCCC
TCCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGAG
GCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGAT
CCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGCT
CGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCCC
GTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCAA
CGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAGC
GTCTCATCGAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGCC
CTCCTCCTCGCCCCCACCGAGACCGTCAAGCAGATCATCATCAACATCGA
GGCTGGTGTTGAGGTTGAGGTCACCATTGCTGCTTAAAAGGTCCACAAGA
TCCGTATCACCCTCACCTCTCGCAAGGTCGCCTCCCTTGAGAAGGTGTGC
TCGGAGCTGATCGACCGTGCTCGCTCCAAGTCCCTCCAGGTCAAGGGTCC
CGTCCGTCTTCCCACCAAGACCCTTCACATCTCGACCCGTAAGACCCCCA
ACGGTGAGGGTTCCAAGACCTGGGACAAGTACGAGATGCGCATCCACAAG
CGTCTCATCGAATGTCTTTCCAGAAGCCTGAGAAGGATTTCGGCGAGGGC
CCT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
| GO:0015935 | small ribosomal subunit |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Cross References
External references for this mRNA
| Database | Accession |
|---|
| InterPro | IPR018268 |
| InterPro | IPR027486 |
| InterPro | IPR005729 |
| InterPro | IPR036838 |
| PFAM | PF00338 |
| InterPro | IPR001848 |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265CFP |
| Product | 40S ribosomal protein S20 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| MCQH01000068 | supercontig | MCQH01000068:51614..52162 - |
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