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Sequences
The following sequences are available for this feature:
mRNA from alignment at MCQH01000073:534687..536074+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC10864_004409-T1 ID=ATCC10864_004409-T1|Name=ATCC10864_004409-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1388bp|location=Sequence derived from alignment at MCQH01000073:534687..536074+ (Aspergillus niger ATCC 10864)
ATGCTTCAAACGCAGACTCAGCACGTCTTTTCCCACCAGCACCAGTATCC
GCAGGCTGATCCATCCTGGCTGCAGCAACAGCAGCAGCAGCATCATCAAA
CCCACCCGCACCAGGCTCAGCAACCGCATTCTTCGTTGGTCGCCCAACAG
CATGCCCAAGTCCAGGCGGCTGCAGCCGCCGCTGCAGCTGCTCAACAACA
ACACTATACTCGCATAGCCATGGCTGGGAACGCCGGTGCCGGTAATTCCG
CTCAAGGGGCTGGTGCAGGGGGCATTGGTGGGGATGGTGCTTTGCCCGGT
GCGGTGTCCGTGATGGATGGTGGCATCAGTGATGAGAATCGGAAAGTTTT
CATCTGGGTCGCAGAACTCCTCGATCCGAGTCGCAGAGAAGCAGCTCTCA
TGGAGCTTAGCAAGAAGAGAGAGCAAGTGCCGGAACTTGCGTTGGTTATC
TGGCACTCTTTCGGTACGGAAACCCCCCTTTGATCGGCTTTGTTGGTGGC
GACTAACGGGCGTTTTTTCAGGCGTCATGACCGCTTTACTCCAGGAAATC
ATCTCTGTATACCCGTTGTTGAACCCTTCGCAACTGACTGCGGCTGCATC
AAATCGAGTTTGCAATGCGCTTGCTCTCTTGCAGTGTGTGGCTTCCCACA
ACGAGACTCGCACCTTATTTCTAAATGGTACGCAGCCGTCACCTAGGAGC
CATCCACCCCACCCTTCGTTTCCAAGTAGTGTGTGCTTTGACTAACAAAA
TCTCTTTCGCAACAGCTCACATTCCTCTGTTTCTCTATCCTTTCCTCAAC
ACAACGTCAAAGTCGCGGCCCTTCGAGTATCTCCGCCTCACCTCGCTCGG
CGTAATCGGAGCGTTGGTCAAGAATGACTCATCCGATGTCATCAACTTCC
TCCTTACCACAGAGATCATCCCTCTTTGCCTACGAATTATGGAGACCGGC
TCAGAACTTAGCAAGACCGTTGCAATTTTCATCGTGCAGAAGATTCTCCT
CGACGACATCGGCCTCGCGTATATTTGCGCAACGTATGAGAGGTTCTATG
CAGTTGGAACCGTTCTGAGTAATATGGTTACTCAACTTGTTGAGCAACAG
ACAGTACGGCTTCTCAAGCATGTAGTGCGCTGCTTCCTTCGGTGAGTCCT
GCCACGATTTTCCTTGTATCGCGTAACTCGGTTTGGTTCTCCAAATGCTG
ACTTCTGTAGCTTGAGTGATAACAGCAGGGCGCGAGAGGCGTTGCGTCAA
TGCCTTCCCGAACCTTTGCGCGATGCGACATTCTCCTCCGTACTCCGCGA
CGACGCCGCCACTAAGCGCTGCTTGGCACAGCTTCTCATCAACCTTTCGG
ATAACGTCTCCGATGGCGCACCTGGTGTTGCGATGTAA back to topCoding sequence (CDS) from alignment at MCQH01000073:534687..536074+ >ATCC10864_004409-T1 ID=ATCC10864_004409-T1|Name=ATCC10864_004409-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=4692bp|location=Sequence derived from alignment at MCQH01000073:534687..536074+ (Aspergillus niger ATCC 10864)
ATGCTTCAAACGCAGACTCAGCACGTCTTTTCCCACCAGCACCAGTATCC
GCAGGCTGATCCATCCTGGCTGCAGCAACAGCAGCAGCAGCATCATCAAA
CCCACCCGCACCAGGCTCAGCAACCGCATTCTTCGTTGGTCGCCCAACAG
CATGCCCAAGTCCAGGCGGCTGCAGCCGCCGCTGCAGCTGCTCAACAACA
ACACTATACTCGCATAGCCATGGCTGGGAACGCCGGTGCCGGTAATTCCG
CTCAAGGGGCTGGTGCAGGGGGCATTGGTGGGGATGGTGCTTTGCCCGGT
GCGGTGTCCGTGATGGATGGTGGCATCAGTGATGAGAATCGGAAAGTTTT
CATCTGGGTCGCAGAACTCCTCGATCCGAGTCGCAGAGAAGCAGCTCTCA
TGGAGCTTAGCAAGAAGAGAGAGCAAGTGCCGGAACTTGCGTTGGTTATC
TGGCACTCTTTCGGCGTCATGACCGCTTTACTCCAGGAAATCATCTCTGT
ATACCCGTTGTTGAACCCTTCGCAACTGACTGCGGCTGCATCAAATCGAG
TTTGCAATGCGCTTGCTCTCTTGCAGTGTGTGGCTTCCCACAACGAGACT
CGCACCTTATTTCTAAATGCTCACATTCCTCTGTTTCTCTATCCTTTCCT
CAACACAACGTCAAAGTCGCGGCCCTTCGAGTATCTCCGCCTCACCTCGC
TCGGCGTAATCGGAGCGTTGGTCAAGAATGACTCATCCGATGTCATCAAC
TTCCTCCTTACCACAGAGATCATCCCTCTTTGCCTACGAATTATGGAGAC
CGGCTCAGAACTTAGCAAGACCGTTGCAATTTTCATCGTGCAGAAGATTC
TCCTCGACGACATCGGCCTCGCGTATATTTGCGCAACGTATGAGAGGTTC
TATGCAGTTGGAACCGTTCTGAGTAATATGGTTACTCAACTTGTTGAGCA
ACAGACAGTACGGCTTCTCAAGCATGTAGTGCGCTGCTTCCTTCGCTTGA
GTGATAACAGCAGGGCGCGAGAGGCGTTGCGTCAATGCCTTCCCGAACCT
TTGCGCGATGCGACATTCTCCTCCGTACTCCGCGACGACGCCGCCACTAA
GCGCTGCTTGGCACAGCTTCTCATCAACCTTTCGGATAACGTCTCCGATG
GCGCACCTGGTGTTGCGATGTAAATGCTTCAAACGCAGACTCAGCACGTC
TTTTCCCACCAGCACCAGTATCCGCAGGCTGATCCATCCTGGCTGCAGCA
ACAGCAGCAGCAGCATCATCAAACCCACCCGCACCAGGCTCAGCAACCGC
ATTCTTCGTTGGTCGCCCAACAGCATGCCCAAGTCCAGGCGGCTGCAGCC
GCCGCTGCAGCTGCTCAACAACAACACTATACTCGCATAGCCATGGCTGG
GAACGCCGGTGCCGGTAATTCCGCTCAAGGGGCTGGTGCAGGGGGCATTG
GTGGGGATGGTGCTTTGCCCGGTGCGGTGTCCGTGATGGATGGTGGCATC
AGTGATGAGAATCGGAAAGTTTTCATCTGGGTCGCAGAACTCCTCGATCC
GAGTCGCAGAGAAGCAGCTCTCATGGAGCTTAGCAAGAAGAGAGAGCAAG
TGCCGGAACTTGCGTTGGTTATCTGGCACTCTTTCGGCGTCATGACCGCT
TTACTCCAGGAAATCATCTCTGTATACCCGTTGTTGAACCCTTCGCAACT
GACTGCGGCTGCATCAAATCGAGTTTGCAATGCGCTTGCTCTCTTGCAGT
GTGTGGCTTCCCACAACGAGACTCGCACCTTATTTCTAAATGCTCACATT
CCTCTGTTTCTCTATCCTTTCCTCAACACAACGTCAAAGTCGCGGCCCTT
CGAGTATCTCCGCCTCACCTCGCTCGGCGTAATCGGAGCGTTGGTCAAGA
ATGACTCATCCGATGTCATCAACTTCCTCCTTACCACAGAGATCATCCCT
CTTTGCCTACGAATTATGGAGACCGGCTCAGAACTTAGCAAGACCGTTGC
AATTTTCATCGTGCAGAAGATTCTCCTCGACGACATCGGCCTCGCGTATA
TTTGCGCAACGTATGAGAGGTTCTATGCAGTTGGAACCGTTCTGAGTAAT
ATGGTTACTCAACTTGTTGAGCAACAGACAGTACGGCTTCTCAAGCATGT
AGTGCGCTGCTTCCTTCGCTTGAGTGATAACAGCAGGGCGCGAGAGGCGT
TGCGTCAATGCCTTCCCGAACCTTTGCGCGATGCGACATTCTCCTCCGTA
CTCCGCGACGACGCCGCCACTAAGCGCTGCTTGGCACAGCTTCTCATCAA
CCTTTCGGATAACGTCTCCGATGGCGCACCTGGTGTTGCGATGTAAATGC
TTCAAACGCAGACTCAGCACGTCTTTTCCCACCAGCACCAGTATCCGCAG
GCTGATCCATCCTGGCTGCAGCAACAGCAGCAGCAGCATCATCAAACCCA
CCCGCACCAGGCTCAGCAACCGCATTCTTCGTTGGTCGCCCAACAGCATG
CCCAAGTCCAGGCGGCTGCAGCCGCCGCTGCAGCTGCTCAACAACAACAC
TATACTCGCATAGCCATGGCTGGGAACGCCGGTGCCGGTAATTCCGCTCA
AGGGGCTGGTGCAGGGGGCATTGGTGGGGATGGTGCTTTGCCCGGTGCGG
TGTCCGTGATGGATGGTGGCATCAGTGATGAGAATCGGAAAGTTTTCATC
TGGGTCGCAGAACTCCTCGATCCGAGTCGCAGAGAAGCAGCTCTCATGGA
GCTTAGCAAGAAGAGAGAGCAAGTGCCGGAACTTGCGTTGGTTATCTGGC
ACTCTTTCGGCGTCATGACCGCTTTACTCCAGGAAATCATCTCTGTATAC
CCGTTGTTGAACCCTTCGCAACTGACTGCGGCTGCATCAAATCGAGTTTG
CAATGCGCTTGCTCTCTTGCAGTGTGTGGCTTCCCACAACGAGACTCGCA
CCTTATTTCTAAATGCTCACATTCCTCTGTTTCTCTATCCTTTCCTCAAC
ACAACGTCAAAGTCGCGGCCCTTCGAGTATCTCCGCCTCACCTCGCTCGG
CGTAATCGGAGCGTTGGTCAAGAATGACTCATCCGATGTCATCAACTTCC
TCCTTACCACAGAGATCATCCCTCTTTGCCTACGAATTATGGAGACCGGC
TCAGAACTTAGCAAGACCGTTGCAATTTTCATCGTGCAGAAGATTCTCCT
CGACGACATCGGCCTCGCGTATATTTGCGCAACGTATGAGAGGTTCTATG
CAGTTGGAACCGTTCTGAGTAATATGGTTACTCAACTTGTTGAGCAACAG
ACAGTACGGCTTCTCAAGCATGTAGTGCGCTGCTTCCTTCGCTTGAGTGA
TAACAGCAGGGCGCGAGAGGCGTTGCGTCAATGCCTTCCCGAACCTTTGC
GCGATGCGACATTCTCCTCCGTACTCCGCGACGACGCCGCCACTAAGCGC
TGCTTGGCACAGCTTCTCATCAACCTTTCGGATAACGTCTCCGATGGCGC
ACCTGGTGTTGCGATGTAAATGCTTCAAACGCAGACTCAGCACGTCTTTT
CCCACCAGCACCAGTATCCGCAGGCTGATCCATCCTGGCTGCAGCAACAG
CAGCAGCAGCATCATCAAACCCACCCGCACCAGGCTCAGCAACCGCATTC
TTCGTTGGTCGCCCAACAGCATGCCCAAGTCCAGGCGGCTGCAGCCGCCG
CTGCAGCTGCTCAACAACAACACTATACTCGCATAGCCATGGCTGGGAAC
GCCGGTGCCGGTAATTCCGCTCAAGGGGCTGGTGCAGGGGGCATTGGTGG
GGATGGTGCTTTGCCCGGTGCGGTGTCCGTGATGGATGGTGGCATCAGTG
ATGAGAATCGGAAAGTTTTCATCTGGGTCGCAGAACTCCTCGATCCGAGT
CGCAGAGAAGCAGCTCTCATGGAGCTTAGCAAGAAGAGAGAGCAAGTGCC
GGAACTTGCGTTGGTTATCTGGCACTCTTTCGGCGTCATGACCGCTTTAC
TCCAGGAAATCATCTCTGTATACCCGTTGTTGAACCCTTCGCAACTGACT
GCGGCTGCATCAAATCGAGTTTGCAATGCGCTTGCTCTCTTGCAGTGTGT
GGCTTCCCACAACGAGACTCGCACCTTATTTCTAAATGCTCACATTCCTC
TGTTTCTCTATCCTTTCCTCAACACAACGTCAAAGTCGCGGCCCTTCGAG
TATCTCCGCCTCACCTCGCTCGGCGTAATCGGAGCGTTGGTCAAGAATGA
CTCATCCGATGTCATCAACTTCCTCCTTACCACAGAGATCATCCCTCTTT
GCCTACGAATTATGGAGACCGGCTCAGAACTTAGCAAGACCGTTGCAATT
TTCATCGTGCAGAAGATTCTCCTCGACGACATCGGCCTCGCGTATATTTG
CGCAACGTATGAGAGGTTCTATGCAGTTGGAACCGTTCTGAGTAATATGG
TTACTCAACTTGTTGAGCAACAGACAGTACGGCTTCTCAAGCATGTAGTG
CGCTGCTTCCTTCGCTTGAGTGATAACAGCAGGGCGCGAGAGGCGTTGCG
TCAATGCCTTCCCGAACCTTTGCGCGATGCGACATTCTCCTCCGTACTCC
GCGACGACGCCGCCACTAAGCGCTGCTTGGCACAGCTTCTCATCAACCTT
TCGGATAACGTCTCCGATGGCGCACCTGGTGTTGCGATGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006402 | mRNA catabolic process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0030014 | CCR4-NOT complex |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Cross References
External references for this mRNA
| Database | Accession |
|---|
| PFAM | PF04078 |
| InterPro | IPR016024 |
| InterPro | IPR007216 |
| InterPro | IPR011989 |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263Q8J |
| Product | Cell differentiation protein rcd1 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| MCQH01000073 | supercontig | MCQH01000073:534687..536074 + |
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