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ATCC10864_004502-T1, ATCC10864_004502-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_004502-T1
Unique NameATCC10864_004502-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000074:163680..164565+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_004502-T1 ID=ATCC10864_004502-T1|Name=ATCC10864_004502-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=886bp|location=Sequence derived from alignment at MCQH01000074:163680..164565+ (Aspergillus niger ATCC 10864)
ATGTGTACGTGAATGACCCTGAAATCGGATTTCCAACCCTGCCTATTTGA
TTTCCGTCGCTGTTCGTTTTTTGCCGGTCATTTTTGGAGGAAATATTCAT
CGCTGGGGTTTTGGAGAAAAGAGAAAAGGACTATCATCGCGGATATAGAC
GGCAGCAACAGCAGCGACGGAATCATTGAATATTTTTCATCATCATCATG
GCAACAACCGATTTCTTAAGACAGAAAGGCTGACTTGCGGTTTTTGGAAT
TTTTTAGCGCTCGTGTCCGGCGAGAAGACGAACTTCCAGTACATTCTGCG
TCTGCTCAACACCAATGTTGACGGCAAGCAGAAGATCATGTACGCCTTGA
CCCAGATCAAGGGTGTTGGTCGCCGTTACTCCAACTTGGTCTGCAAGAAG
GCCGACGTTGACCTCAGCAAGCGGTACGTTTACACTACACTACATTTCTC
GATGGTTCGAATGCGAGGCAGGGGATAAAAGAGTGGGAGTGGATTCCACG
GACAAGAGAAGGGAGAAGAGCAAACACCACGAGGTTGAAAGGGCAGGAGA
TACAAGAACAGCCAAGTTGACTTTCCTACTTTCTACAGCGCTGGTGAACT
CACCACCGAAGAGCTCGAGCGTATCGTCACCATCCTCCAGAGCCCCACCC
AGTACAAGATCCCCACCTGGTTCCTCAACAGACAGCGCGACATCACCGAT
GGCAAGGACTCCCAGGTCGTCTCCAACTCCCTCGACAGCAAGATCCGTGA
GGATCTCGAGCGCCTGAAGAAGATCCGCTCCCACCGTGGTCTCCGTCACT
ACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACCACCGGTCGTCGT
GGACGCACCGTCGGTGTCAGCAAGAAGAAGAACTAA
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Coding sequence (CDS) from alignment at MCQH01000074:163680..164565+

>ATCC10864_004502-T1 ID=ATCC10864_004502-T1|Name=ATCC10864_004502-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1404bp|location=Sequence derived from alignment at MCQH01000074:163680..164565+ (Aspergillus niger ATCC 10864)
ATGTCGCTCGTGTCCGGCGAGAAGACGAACTTCCAGTACATTCTGCGTCT
GCTCAACACCAATGTTGACGGCAAGCAGAAGATCATGTACGCCTTGACCC
AGATCAAGGGTGTTGGTCGCCGTTACTCCAACTTGGTCTGCAAGAAGGCC
GACGTTGACCTCAGCAAGCGCGCTGGTGAACTCACCACCGAAGAGCTCGA
GCGTATCGTCACCATCCTCCAGAGCCCCACCCAGTACAAGATCCCCACCT
GGTTCCTCAACAGACAGCGCGACATCACCGATGGCAAGGACTCCCAGGTC
GTCTCCAACTCCCTCGACAGCAAGATCCGTGAGGATCTCGAGCGCCTGAA
GAAGATCCGCTCCCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCC
GCGGTCAGCACACCAAGACCACCGGTCGTCGTGGACGCACCGTCGGTGTC
AGCAAGAAGAAGAACTAAATGTCGCTCGTGTCCGGCGAGAAGACGAACTT
CCAGTACATTCTGCGTCTGCTCAACACCAATGTTGACGGCAAGCAGAAGA
TCATGTACGCCTTGACCCAGATCAAGGGTGTTGGTCGCCGTTACTCCAAC
TTGGTCTGCAAGAAGGCCGACGTTGACCTCAGCAAGCGCGCTGGTGAACT
CACCACCGAAGAGCTCGAGCGTATCGTCACCATCCTCCAGAGCCCCACCC
AGTACAAGATCCCCACCTGGTTCCTCAACAGACAGCGCGACATCACCGAT
GGCAAGGACTCCCAGGTCGTCTCCAACTCCCTCGACAGCAAGATCCGTGA
GGATCTCGAGCGCCTGAAGAAGATCCGCTCCCACCGTGGTCTCCGTCACT
ACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACCACCGGTCGTCGT
GGACGCACCGTCGGTGTCAGCAAGAAGAAGAACTAAATGTCGCTCGTGTC
CGGCGAGAAGACGAACTTCCAGTACATTCTGCGTCTGCTCAACACCAATG
TTGACGGCAAGCAGAAGATCATGTACGCCTTGACCCAGATCAAGGGTGTT
GGTCGCCGTTACTCCAACTTGGTCTGCAAGAAGGCCGACGTTGACCTCAG
CAAGCGCGCTGGTGAACTCACCACCGAAGAGCTCGAGCGTATCGTCACCA
TCCTCCAGAGCCCCACCCAGTACAAGATCCCCACCTGGTTCCTCAACAGA
CAGCGCGACATCACCGATGGCAAGGACTCCCAGGTCGTCTCCAACTCCCT
CGACAGCAAGATCCGTGAGGATCTCGAGCGCCTGAAGAAGATCCGCTCCC
ACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCACACC
AAGACCACCGGTCGTCGTGGACGCACCGTCGGTGTCAGCAAGAAGAAGAA
CTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS18ATCC10864_004502Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004502-T1.exon1ATCC10864_004502-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_004502-T1.exon2ATCC10864_004502-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_004502-T1.exon3ATCC10864_004502-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004502-T1.cdsATCC10864_004502-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004502-T1ATCC10864_004502-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR027437
InterProIPR001892
InterProIPR010979
InterProIPR018269
PFAMPF00416
Properties
Property NameValue
NoteBUSCO:EOG09264YEG
Productribosomal 40S subunit protein S18B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000074supercontigMCQH01000074:163680..164565 +
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