You are here

Home

ATCC10864_004504-T1, ATCC10864_004504-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_004504-T1
Unique NameATCC10864_004504-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000074:167533..168725+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_004504-T1 ID=ATCC10864_004504-T1|Name=ATCC10864_004504-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1193bp|location=Sequence derived from alignment at MCQH01000074:167533..168725+ (Aspergillus niger ATCC 10864)
ATGCCCATCAACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGT
CGTCAGGCTAAAAAAGGGTACGTATTGATATGCATGTGTGGCCCTTCATT
TGCGATCGTCTTGCGTGGCATGTCTGTCAATAATGTGGGGAGATCATGCG
CAAATTCAGCGTAGAAAGAAAAACTGCCTGCGAAACTTCCAGTCGGCCCC
GCAACCCCGCTAACCGTTTCACCAACAGGTAAAAAGCGCTTCGAACTCGC
CTGCTACAAGAACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAGGATC
TCGACAATGTCCTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAAAGCG
CAAACAGCCCCATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACACGCC
TGCAGATGAGATCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAAGTTG
GCGAGCGTGAGCGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGTGTTG
GATATCGTATCAGGACGGCTTGTTGATCCTACGACGAAGCGAGTCTATAC
CCCCGGAATGATTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGTGGTC
AACAGCAGTCGCAAACGTCTGGCAATGGGGAGACTAATGGGGACGACAGC
GAGGAGAGCCGCCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCAACAA
GTCGGCGAAGAGTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCATGGC
AACCTATCCCTGTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTGTCCT
GTGTCACTGTTGAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTGCTGC
CGCGGGTGGTAAAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAGTCGA
ACAAGAAGGGTGGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATCCGAG
GATGAGGCAGGTGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTCCGAG
CAATGTCAAGGATAAGATCCTGAGCTATATCGAATCTATTGAGGCTCAGG
AGGTTGTCGGCGGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCCGGGA
GCTTTCAAGGGATTGAATGAATTTGTGGGCAACGAGACCCGGGGCAGAGG
ACGTGTGGAGGTGCTGGATATGACGGTGACCCATGAAGAGTAA
back to top

Coding sequence (CDS) from alignment at MCQH01000074:167533..168725+

>ATCC10864_004504-T1 ID=ATCC10864_004504-T1|Name=ATCC10864_004504-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2064bp|location=Sequence derived from alignment at MCQH01000074:167533..168725+ (Aspergillus niger ATCC 10864)
ATGCCCATCAACCAACCATCAAATCAGATTAAATTTACCAACGTATCAGT
CGTCAGGCTAAAAAAGGGTAAAAAGCGCTTCGAACTCGCCTGCTACAAGA
ACAAACTCCTCGAGTACCGCTCCGGAGCAGAGAAGGATCTCGACAATGTC
CTCCAAGTCCCCACGATCTTCCTGTCGGTTTCCAAAGCGCAAACAGCCCC
ATCCGCCGAGTTAACAAAGGCCTTCGGCGCCGACACGCCTGCAGATGAGA
TCCGGCAAGAAATTCTACGAAAGGGTGAAGTGCAAGTTGGCGAGCGTGAG
CGCAAGGAAATCATCGAGCGCGTGGAGAAGGAGGTGTTGGATATCGTATC
AGGACGGCTTGTTGATCCTACGACGAAGCGAGTCTATACCCCCGGAATGA
TTTCCAAGGCCTTGGACCAGCTCAGCTCGGCTAGTGGTCAACAGCAGTCG
CAAACGTCTGGCAATGGGGAGACTAATGGGGACGACAGCGAGGAGAGCCG
CCCGAGGAAACCGCTCTGGACGGGTGTGACGGCCAACAAGTCGGCGAAGA
GTCAAGCGCTTGAAGCTATGAAGGCGCTTATTGCATGGCAACCTATCCCT
GTGATGCGGGCGCGGATGCGCCTCCGTGTCACCTGTCCTGTGTCACTGTT
GAAGCAGAGTGTTAAGGGTGGTGCGGCCGGTGGTGCTGCCGCGGGTGGTA
AAGAAAAGGAGGCGCCGTCCAAGAGCGGCTCCAAGTCGAACAAGAAGGGT
GGAAAGGGGTCCAAGAAAGCCCGTCAGCAGGAATCCGAGGATGAGGCAGG
TGGATCTGACGCAGAGTCCGCACCTGCCAAGGGTCCGAGCAATGTCAAGG
ATAAGATCCTGAGCTATATCGAATCTATTGAGGCTCAGGAGGTTGTCGGC
GGAGACGAGTGGGAGATCATTGGCTTTGCTGAGCCGGGAGCTTTCAAGGG
ATTGAATGAATTTGTGGGCAACGAGACCCGGGGCAGAGGACGTGTGGAGG
TGCTGGATATGACGGTGACCCATGAAGAGTAAATGCCCATCAACCAACCA
TCAAATCAGATTAAATTTACCAACGTATCAGTCGTCAGGCTAAAAAAGGG
TAAAAAGCGCTTCGAACTCGCCTGCTACAAGAACAAACTCCTCGAGTACC
GCTCCGGAGCAGAGAAGGATCTCGACAATGTCCTCCAAGTCCCCACGATC
TTCCTGTCGGTTTCCAAAGCGCAAACAGCCCCATCCGCCGAGTTAACAAA
GGCCTTCGGCGCCGACACGCCTGCAGATGAGATCCGGCAAGAAATTCTAC
GAAAGGGTGAAGTGCAAGTTGGCGAGCGTGAGCGCAAGGAAATCATCGAG
CGCGTGGAGAAGGAGGTGTTGGATATCGTATCAGGACGGCTTGTTGATCC
TACGACGAAGCGAGTCTATACCCCCGGAATGATTTCCAAGGCCTTGGACC
AGCTCAGCTCGGCTAGTGGTCAACAGCAGTCGCAAACGTCTGGCAATGGG
GAGACTAATGGGGACGACAGCGAGGAGAGCCGCCCGAGGAAACCGCTCTG
GACGGGTGTGACGGCCAACAAGTCGGCGAAGAGTCAAGCGCTTGAAGCTA
TGAAGGCGCTTATTGCATGGCAACCTATCCCTGTGATGCGGGCGCGGATG
CGCCTCCGTGTCACCTGTCCTGTGTCACTGTTGAAGCAGAGTGTTAAGGG
TGGTGCGGCCGGTGGTGCTGCCGCGGGTGGTAAAGAAAAGGAGGCGCCGT
CCAAGAGCGGCTCCAAGTCGAACAAGAAGGGTGGAAAGGGGTCCAAGAAA
GCCCGTCAGCAGGAATCCGAGGATGAGGCAGGTGGATCTGACGCAGAGTC
CGCACCTGCCAAGGGTCCGAGCAATGTCAAGGATAAGATCCTGAGCTATA
TCGAATCTATTGAGGCTCAGGAGGTTGTCGGCGGAGACGAGTGGGAGATC
ATTGGCTTTGCTGAGCCGGGAGCTTTCAAGGGATTGAATGAATTTGTGGG
CAACGAGACCCGGGGCAGAGGACGTGTGGAGGTGCTGGATATGACGGTGA
CCCATGAAGAGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
GO:0042256mature ribosome assembly
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC10864_004504ATCC10864_004504Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004504-T1.exon1ATCC10864_004504-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_004504-T1.exon2ATCC10864_004504-T1.exon2Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004504-T1.cdsATCC10864_004504-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004504-T1ATCC10864_004504-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR039100
InterProIPR002140
InterProIPR036786
InterProIPR037188
InterProIPR019783
PFAMPF09377
InterProIPR018978
PFAMPF01172
Properties
Property NameValue
NoteBUSCO:EOG0926400M
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000074supercontigMCQH01000074:167533..168725 +
Powered by Drupal