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ATCC10864_004627-T1, ATCC10864_004627-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_004627-T1
Unique NameATCC10864_004627-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000084:17288..18070+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_004627-T1 ID=ATCC10864_004627-T1|Name=ATCC10864_004627-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=783bp|location=Sequence derived from alignment at MCQH01000084:17288..18070+ (Aspergillus niger ATCC 10864)
ATGAAATCATCGCAAAGGACCGACGACTTGCACAACAGTCAACAACGTTT
CGCACGGAATATACGCAACGACTGAAGCCATTGCACGAGGCAGTTCTCAT
CGGATGGGAGAACATGGCTGACTGGGATCCTTAGGGCGTCTCACCGAGTA
CCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCAAGC
TGTACCGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGG
TTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGA
GATCGTCAGCATCAATGTGGTATGTGTGGCCGTTATCAAGCGACAACTCG
GCAGTGTTGGCTGACGCCTGTCTTTTTTCCCCATCCAATAGATCAGCGAG
AAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTC
CCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCA
CCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCC
CGCTTCGGCTCCATCCACGTATGTTGAGATTCCTATCCTCTTTTGCTGAG
GAATATTGCGATCTAACTACGTTCCTACAGATCCTTAAGGTTGTTGAGAT
CGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCA
AGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTG
TTCGCTTACTCTCGTCCCACTACTTTCGCGTAA
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Coding sequence (CDS) from alignment at MCQH01000084:17288..18070+

>ATCC10864_004627-T1 ID=ATCC10864_004627-T1|Name=ATCC10864_004627-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2244bp|location=Sequence derived from alignment at MCQH01000084:17288..18070+ (Aspergillus niger ATCC 10864)
ATGAAATCATCGCAAAGGACCGACGACTTGCACAACAGTCAACAACGGCG
TCTCACCGAGTACCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTAACC
CCACGCCCAAGCTGTACCGCATGCGCATCTTCGCGCCCAACACTGTTGTC
GCTAAGTCCCGGTTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAA
GGCCAACGGTGAGATCGTCAGCATCAATGTGATCAGCGAGAAGCGCCCTA
CCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTCCCGCTCCGGC
ACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCACCGAGGCTGT
TGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCCCGCTTCGGCT
CCATCCACATCCTTAAGGTTGTTGAGATCGAGAACGCCGACAGCATCCGC
CGCCCCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCC
CCACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTCTCGTCCCACTA
CTTTCGCGTAAATGAAATCATCGCAAAGGACCGACGACTTGCACAACAGT
CAACAACGGCGTCTCACCGAGTACCAGGTCATTGGGCGTCACCTGCCCAC
CGAGGCTAACCCCACGCCCAAGCTGTACCGCATGCGCATCTTCGCGCCCA
ACACTGTTGTCGCTAAGTCCCGGTTCTGGTACTTCCTGACCCAGCTCCGC
AAGGTCAAGAAGGCCAACGGTGAGATCGTCAGCATCAATGTGATCAGCGA
GAAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACT
CCCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGC
ACCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGC
CCGCTTCGGCTCCATCCACATCCTTAAGGTTGTTGAGATCGAGAACGCCG
ACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAG
TTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTC
TCGTCCCACTACTTTCGCGTAAATGAAATCATCGCAAAGGACCGACGACT
TGCACAACAGTCAACAACGGCGTCTCACCGAGTACCAGGTCATTGGGCGT
CACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTACCGCATGCGCAT
CTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCTGGTACTTCCTGA
CCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATCGTCAGCATCAAT
GTGATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCT
CCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTG
AGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCC
CGCCACCGTGCCCGCTTCGGCTCCATCCACATCCTTAAGGTTGTTGAGAT
CGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCA
AGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTG
TTCGCTTACTCTCGTCCCACTACTTTCGCGTAAATGAAATCATCGCAAAG
GACCGACGACTTGCACAACAGTCAACAACGGCGTCTCACCGAGTACCAGG
TCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTAC
CGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCTG
GTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATCG
TCAGCATCAATGTGATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTC
GGTATCTGGCTCCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAA
GGAGTTCCGTGAGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGG
ACATGGCTGCCCGCCACCGTGCCCGCTTCGGCTCCATCCACATCCTTAAG
GTTGTTGAGATCGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGCA
GCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACG
GCAAGAAGCTGTTCGCTTACTCTCGTCCCACTACTTTCGCGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL20AATCC10864_004627Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004627-T1.exon1ATCC10864_004627-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_004627-T1.exon2ATCC10864_004627-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_004627-T1.exon3ATCC10864_004627-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_004627-T1.exon4ATCC10864_004627-T1.exon4Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004627-T1.cdsATCC10864_004627-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004627-T1ATCC10864_004627-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR021138
InterProIPR023573
PFAMPF01775
InterProIPR028877
Properties
Property NameValue
Product60S ribosomal protein L20A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000084supercontigMCQH01000084:17288..18070 +
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