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Sequences
The following sequences are available for this feature:
mRNA from alignment at MCQH01000084:378433..379705+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC10864_004744-T1 ID=ATCC10864_004744-T1|Name=ATCC10864_004744-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1273bp|location=Sequence derived from alignment at MCQH01000084:378433..379705+ (Aspergillus niger ATCC 10864)
ATGTCCGGTGAAAAGATCTACGAAGGCGTATTCGGTATACCTCACTCCTA
GCATTATTGCTTTAATGTACCTCCAAGCTAATATAACGGAATGATAAACA
GCCGTCCACAAACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCT
CCAAACGCACTTCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCCGACG
AGCGCGCCCGTCGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGC
ACGCAACGTCTCGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCT
CGCGACCGGCATTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGA
ACGAGTTCCTAGGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGC
GCCGAGACAGATACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCC
CTACGAGCATGTGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCC
GCGGGAAGATTATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAAT
GGCAAGAAGCTTTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGA
GATCCAGAAGAGGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGT
ACGAGCCTGGAACGCATGAGTTTAAATGGCCTGAGGTTGAGGCAGAGGGG
GAGGAGAAGGCTGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCC
GATTGTGGAGAGGGAGGCAGATGGTGAAGGAGAGGCCTCTGCGAAGAGAA
AGTCCCCGCCTGCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGAT
GCTGAGTCTGCTCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGC
TGCGCCTGTTGCGCCGGCCGAGCAGGAAGCGTCGGATGCTCCCAAGGCTG
AAGCCGAGGAATCCTCGGAATCCAAGCCCCAGTCCCAGCCTCAGCCGGCT
GCAGTGAAGATCACCATGACGGTGTCTTCTGGCTTCTATGTGCGCTCCTT
GGCGCACGACCTGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGC
TGATCCGGTCTCGTCAGGCTCAATTCGAGCTTCACCCGGACAAGGTGCTC
GAGTATAAGGACCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCA
GCGATTCCTCGAGGACTGGGAGGAAAAGCGACTGGCTCGGCCGTCGTCTC
CGCGTTCCCCGAAACAAAATTAG back to topCoding sequence (CDS) from alignment at MCQH01000084:378433..379705+ >ATCC10864_004744-T1 ID=ATCC10864_004744-T1|Name=ATCC10864_004744-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2412bp|location=Sequence derived from alignment at MCQH01000084:378433..379705+ (Aspergillus niger ATCC 10864)
ATGTCCGGTGAAAAGATCTACGAAGGCGTATTCGCCGTCCACAAACCCCA
AGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTCCAAACGCACTTCAACC
CCTCCACGCTCTTCGCCCCCTGGCTCGCCGACGAGCGCGCCCGTCGCGCC
CGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCACGCAACGTCTCGACGT
GAAGATCGGCCACGGAGGCACCCTCGACCCCCTCGCGACCGGCATTCTCG
TCGCGGGAGTCGGCAAGGGCACGAAACACCTGAACGAGTTCCTAGGATGC
ACGAAGCAATATGAGACCGTTGTGCTGTTCGGCGCCGAGACAGATACCTA
TGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCCTACGAGCATGTGACAA
GGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCGCGGGAAGATTATGCAG
AGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATGGCAAGAAGCTTTATGA
GTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAGATCCAGAAGAGGCCGG
TCGAGGTGACGGATTTGAGGATTGTCGAGTGGTACGAGCCTGGAACGCAT
GAGTTTAAATGGCCTGAGGTTGAGGCAGAGGGGGAGGAGAAGGCTGTTGC
GGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCGATTGTGGAGAGGGAGG
CAGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAAGTCCCCGCCTGCGGAG
GATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATGCTGAGTCTGCTCCCTC
GGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCTGCGCCTGTTGCGCCGG
CCGAGCAGGAAGCGTCGGATGCTCCCAAGGCTGAAGCCGAGGAATCCTCG
GAATCCAAGCCCCAGTCCCAGCCTCAGCCGGCTGCAGTGAAGATCACCAT
GACGGTGTCTTCTGGCTTCTATGTGCGCTCCTTGGCGCACGACCTGGGCA
AGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCTGATCCGGTCTCGTCAG
GCTCAATTCGAGCTTCACCCGGACAAGGTGCTCGAGTATAAGGACCTCGA
GGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAGCGATTCCTCGAGGACT
GGGAGGAAAAGCGACTGGCTCGGCCGTCGTCTCCGCGTTCCCCGAAACAA
AATTAGATGTCCGGTGAAAAGATCTACGAAGGCGTATTCGCCGTCCACAA
ACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTCCAAACGCACT
TCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCCGACGAGCGCGCCCGT
CGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCACGCAACGTCT
CGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCTCGCGACCGGCA
TTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGAACGAGTTCCTA
GGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGCGCCGAGACAGA
TACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCCTACGAGCATG
TGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCGCGGGAAGATT
ATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATGGCAAGAAGCT
TTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAGATCCAGAAGA
GGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGTACGAGCCTGGA
ACGCATGAGTTTAAATGGCCTGAGGTTGAGGCAGAGGGGGAGGAGAAGGC
TGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCGATTGTGGAGA
GGGAGGCAGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAAGTCCCCGCCT
GCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATGCTGAGTCTGC
TCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCTGCGCCTGTTG
CGCCGGCCGAGCAGGAAGCGTCGGATGCTCCCAAGGCTGAAGCCGAGGAA
TCCTCGGAATCCAAGCCCCAGTCCCAGCCTCAGCCGGCTGCAGTGAAGAT
CACCATGACGGTGTCTTCTGGCTTCTATGTGCGCTCCTTGGCGCACGACC
TGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCTGATCCGGTCT
CGTCAGGCTCAATTCGAGCTTCACCCGGACAAGGTGCTCGAGTATAAGGA
CCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAGCGATTCCTCG
AGGACTGGGAGGAAAAGCGACTGGCTCGGCCGTCGTCTCCGCGTTCCCCG
AAACAAAATTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009982 | pseudouridine synthase activity |
| GO:0003723 | RNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0001522 | pseudouridine synthesis |
| GO:0006396 | RNA processing |
| GO:0009451 | RNA modification |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Cross References
External references for this mRNA
| Database | Accession |
|---|
| InterPro | IPR002501 |
| InterPro | IPR014780 |
| InterPro | IPR020103 |
| PFAM | PF01509 |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264HU0 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| MCQH01000084 | supercontig | MCQH01000084:378433..379705 + |
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