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ATCC10864_005090-T1, ATCC10864_005090-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_005090-T1
Unique NameATCC10864_005090-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000140:20010..21092-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_005090-T1 ID=ATCC10864_005090-T1|Name=ATCC10864_005090-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1083bp|location=Sequence derived from alignment at MCQH01000140:20010..21092- (Aspergillus niger ATCC 10864)
ATGGCCGTTGGAAAGTACGTGAATGCCCTACTCTATTATGATTTATGTTG
CAGCAATTCGATTGTAGTAGTCTCTTACTGATTTTATGGCAGGAACAAGC
GCTTGTCGAAGGGCAAGAAGGGTGTTAAGAAGAGAACTGTCGACCCTTTC
ACCCGGAAAGACGAGTACTCTGTGAAGGTAAGTGTGCAACTTGAGGGTGT
GTGGATTTTGCTGACAGGAATAGGCTCCCTCGACCTTCCAGACCAGAGAG
TATGGCATCGCCCCTCCCCCCCAAATTTCGTCGTCGGGACTTTCAGATAT
TCTTTCGCCTCGTTATAATCATTTTTTGTCGCATTCCCCATGTGCAAACC
AGTCACTGACCAGTTCTTGTTGAAGTGTTGGAAAGACTCTGGTGAACCGT
ACCAGTGGTCTGAAGAACGCGAACGATTCCCTGAAGGGCCGTATCTTCGA
AGTCTCCCTTGCCGACTTGCAGAATGACGAGGACCATGCCTTCCGTAAGG
TCAAGCTCCGCGTGGACGAAATCCAGGGAAAGAACTGCCTGACCAACTTC
CACGGTCTGGATTTCACGACCGACAAGCTGCGATCCCTTGTGCGCAAGTG
GCAGTCGCTGATTGAAGCCAACGTCACTGTGAAGACGACCGATGACTATC
TTCTCCGTCTGTTCGCCATCGCCTTCACGAAGAGACGCCCCAACCAAATC
AAGAAGACTACATATGCTCGCTCGTCCCAAATCCGCGCTATTCGCAAGAA
GATGACCGAGATCATGCAGCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGC
TTACTACCAAGTTGATCCCCGAAGTCATCGGTCGTGAGATTGAGAAGGCT
ACCCAGGGAATTTACCCCCTGCAGAACGTTCGTCCCCCTCGACCCTCGTA
TTCTATCAAATGATTGCGATCCATCTAATACTCTATTAGGTCCACATTCG
CAAGGTCAAGCTTCTTAAGTCCCCCAAGTTCGACCTCGGTGCCCTCCTTA
ACTTGCACGGCGAGTCTACAACCGATGATAAGGGACACAAGGTTGAGAGA
GAGTTCAAGGAACAGGTTCTTGAGAGCGTGTAA
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Coding sequence (CDS) from alignment at MCQH01000140:20010..21092-

>ATCC10864_005090-T1 ID=ATCC10864_005090-T1|Name=ATCC10864_005090-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3855bp|location=Sequence derived from alignment at MCQH01000140:20010..21092- (Aspergillus niger ATCC 10864)
GTCCACATTCGCAAGGTCAAGCTTCTTAAGTCCCCCAAGTTCGACCTCGG
TGCCCTCCTTAACTTGCACGGCGAGTCTACAACCGATGATAAGGGACACA
AGGTTGAGAGAGAGTTCAAGGAACAGGTTCTTGAGAGCGTGTAATGTTGG
AAAGACTCTGGTGAACCGTACCAGTGGTCTGAAGAACGCGAACGATTCCC
TGAAGGGCCGTATCTTCGAAGTCTCCCTTGCCGACTTGCAGAATGACGAG
GACCATGCCTTCCGTAAGGTCAAGCTCCGCGTGGACGAAATCCAGGGAAA
GAACTGCCTGACCAACTTCCACGGTCTGGATTTCACGACCGACAAGCTGC
GATCCCTTGTGCGCAAGTGGCAGTCGCTGATTGAAGCCAACGTCACTGTG
AAGACGACCGATGACTATCTTCTCCGTCTGTTCGCCATCGCCTTCACGAA
GAGACGCCCCAACCAAATCAAGAAGACTACATATGCTCGCTCGTCCCAAA
TCCGCGCTATTCGCAAGAAGATGACCGAGATCATGCAGCGCGAGGCCGCT
AGCTGCTCTCTCGCTCAGCTTACTACCAAGTTGATCCCCGAAGTCATCGG
TCGTGAGATTGAGAAGGCTACCCAGGGAATTTACCCCCTGCAGAACGCTC
CCTCGACCTTCCAGACCAGAGAGAACAAGCGCTTGTCGAAGGGCAAGAAG
GGTGTTAAGAAGAGAACTGTCGACCCTTTCACCCGGAAAGACGAGTACTC
TGTGAAGATGGCCGTTGGAAAGTCCACATTCGCAAGGTCAAGCTTCTTAA
GTCCCCCAAGTTCGACCTCGGTGCCCTCCTTAACTTGCACGGCGAGTCTA
CAACCGATGATAAGGGACACAAGGTTGAGAGAGAGTTCAAGGAACAGGTT
CTTGAGAGCGTGTAATGTTGGAAAGACTCTGGTGAACCGTACCAGTGGTC
TGAAGAACGCGAACGATTCCCTGAAGGGCCGTATCTTCGAAGTCTCCCTT
GCCGACTTGCAGAATGACGAGGACCATGCCTTCCGTAAGGTCAAGCTCCG
CGTGGACGAAATCCAGGGAAAGAACTGCCTGACCAACTTCCACGGTCTGG
ATTTCACGACCGACAAGCTGCGATCCCTTGTGCGCAAGTGGCAGTCGCTG
ATTGAAGCCAACGTCACTGTGAAGACGACCGATGACTATCTTCTCCGTCT
GTTCGCCATCGCCTTCACGAAGAGACGCCCCAACCAAATCAAGAAGACTA
CATATGCTCGCTCGTCCCAAATCCGCGCTATTCGCAAGAAGATGACCGAG
ATCATGCAGCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGCTTACTACCAA
GTTGATCCCCGAAGTCATCGGTCGTGAGATTGAGAAGGCTACCCAGGGAA
TTTACCCCCTGCAGAACGCTCCCTCGACCTTCCAGACCAGAGAGAACAAG
CGCTTGTCGAAGGGCAAGAAGGGTGTTAAGAAGAGAACTGTCGACCCTTT
CACCCGGAAAGACGAGTACTCTGTGAAGATGGCCGTTGGAAAGTCCACAT
TCGCAAGGTCAAGCTTCTTAAGTCCCCCAAGTTCGACCTCGGTGCCCTCC
TTAACTTGCACGGCGAGTCTACAACCGATGATAAGGGACACAAGGTTGAG
AGAGAGTTCAAGGAACAGGTTCTTGAGAGCGTGTAATGTTGGAAAGACTC
TGGTGAACCGTACCAGTGGTCTGAAGAACGCGAACGATTCCCTGAAGGGC
CGTATCTTCGAAGTCTCCCTTGCCGACTTGCAGAATGACGAGGACCATGC
CTTCCGTAAGGTCAAGCTCCGCGTGGACGAAATCCAGGGAAAGAACTGCC
TGACCAACTTCCACGGTCTGGATTTCACGACCGACAAGCTGCGATCCCTT
GTGCGCAAGTGGCAGTCGCTGATTGAAGCCAACGTCACTGTGAAGACGAC
CGATGACTATCTTCTCCGTCTGTTCGCCATCGCCTTCACGAAGAGACGCC
CCAACCAAATCAAGAAGACTACATATGCTCGCTCGTCCCAAATCCGCGCT
ATTCGCAAGAAGATGACCGAGATCATGCAGCGCGAGGCCGCTAGCTGCTC
TCTCGCTCAGCTTACTACCAAGTTGATCCCCGAAGTCATCGGTCGTGAGA
TTGAGAAGGCTACCCAGGGAATTTACCCCCTGCAGAACGCTCCCTCGACC
TTCCAGACCAGAGAGAACAAGCGCTTGTCGAAGGGCAAGAAGGGTGTTAA
GAAGAGAACTGTCGACCCTTTCACCCGGAAAGACGAGTACTCTGTGAAGA
TGGCCGTTGGAAAGTCCACATTCGCAAGGTCAAGCTTCTTAAGTCCCCCA
AGTTCGACCTCGGTGCCCTCCTTAACTTGCACGGCGAGTCTACAACCGAT
GATAAGGGACACAAGGTTGAGAGAGAGTTCAAGGAACAGGTTCTTGAGAG
CGTGTAATGTTGGAAAGACTCTGGTGAACCGTACCAGTGGTCTGAAGAAC
GCGAACGATTCCCTGAAGGGCCGTATCTTCGAAGTCTCCCTTGCCGACTT
GCAGAATGACGAGGACCATGCCTTCCGTAAGGTCAAGCTCCGCGTGGACG
AAATCCAGGGAAAGAACTGCCTGACCAACTTCCACGGTCTGGATTTCACG
ACCGACAAGCTGCGATCCCTTGTGCGCAAGTGGCAGTCGCTGATTGAAGC
CAACGTCACTGTGAAGACGACCGATGACTATCTTCTCCGTCTGTTCGCCA
TCGCCTTCACGAAGAGACGCCCCAACCAAATCAAGAAGACTACATATGCT
CGCTCGTCCCAAATCCGCGCTATTCGCAAGAAGATGACCGAGATCATGCA
GCGCGAGGCCGCTAGCTGCTCTCTCGCTCAGCTTACTACCAAGTTGATCC
CCGAAGTCATCGGTCGTGAGATTGAGAAGGCTACCCAGGGAATTTACCCC
CTGCAGAACGCTCCCTCGACCTTCCAGACCAGAGAGAACAAGCGCTTGTC
GAAGGGCAAGAAGGGTGTTAAGAAGAGAACTGTCGACCCTTTCACCCGGA
AAGACGAGTACTCTGTGAAGATGGCCGTTGGAAAGTCCACATTCGCAAGG
TCAAGCTTCTTAAGTCCCCCAAGTTCGACCTCGGTGCCCTCCTTAACTTG
CACGGCGAGTCTACAACCGATGATAAGGGACACAAGGTTGAGAGAGAGTT
CAAGGAACAGGTTCTTGAGAGCGTGTAATGTTGGAAAGACTCTGGTGAAC
CGTACCAGTGGTCTGAAGAACGCGAACGATTCCCTGAAGGGCCGTATCTT
CGAAGTCTCCCTTGCCGACTTGCAGAATGACGAGGACCATGCCTTCCGTA
AGGTCAAGCTCCGCGTGGACGAAATCCAGGGAAAGAACTGCCTGACCAAC
TTCCACGGTCTGGATTTCACGACCGACAAGCTGCGATCCCTTGTGCGCAA
GTGGCAGTCGCTGATTGAAGCCAACGTCACTGTGAAGACGACCGATGACT
ATCTTCTCCGTCTGTTCGCCATCGCCTTCACGAAGAGACGCCCCAACCAA
ATCAAGAAGACTACATATGCTCGCTCGTCCCAAATCCGCGCTATTCGCAA
GAAGATGACCGAGATCATGCAGCGCGAGGCCGCTAGCTGCTCTCTCGCTC
AGCTTACTACCAAGTTGATCCCCGAAGTCATCGGTCGTGAGATTGAGAAG
GCTACCCAGGGAATTTACCCCCTGCAGAACGCTCCCTCGACCTTCCAGAC
CAGAGAGAACAAGCGCTTGTCGAAGGGCAAGAAGGGTGTTAAGAAGAGAA
CTGTCGACCCTTTCACCCGGAAAGACGAGTACTCTGTGAAGATGGCCGTT
GGAAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS1ATCC10864_005090Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005090-T1ATCC10864_005090-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005090-T1.cdsATCC10864_005090-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005090-T1.exon5ATCC10864_005090-T1.exon5Aspergillus niger ATCC 10864exon
ATCC10864_005090-T1.exon4ATCC10864_005090-T1.exon4Aspergillus niger ATCC 10864exon
ATCC10864_005090-T1.exon3ATCC10864_005090-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_005090-T1.exon2ATCC10864_005090-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_005090-T1.exon1ATCC10864_005090-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF01015
InterProIPR001593
InterProIPR027500
InterProIPR018281
Properties
Property NameValue
Productribosomal 40S subunit protein S1B
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000140supercontigMCQH01000140:20010..21092 -
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