You are here

Home

ATCC10864_005108-T1, ATCC10864_005108-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_005108-T1
Unique NameATCC10864_005108-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000140:67340..68214-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_005108-T1 ID=ATCC10864_005108-T1|Name=ATCC10864_005108-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=875bp|location=Sequence derived from alignment at MCQH01000140:67340..68214- (Aspergillus niger ATCC 10864)
ATGGCTCCCAAGGTGGAAAACAAGCAAGGTAGGTACAATTTATGCGATTC
ATCCGTCTTCTTGAAATTTGCAGATTTGTTCTTGTCGAAAACCCGGTTTT
GTGATCCTCGAATGGCATCTACATGTGGCGGTACTTCGGGGGATAAGGCC
CTCTCAGCACGAACGAAAAAAAGGCATTCCCGATGAACGATTCGAGCCCT
TTGTTTCCCCCGTTATTGTCAACTTGCATGGATTTTATTTCGAGCGAGCG
ATGGGCTATATTTTATTTTGAAGTGACGGACGGGCTGACATTCTGGATCT
ATAGGCAAGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGT
CATTAAGGGTGCTGGCGTACGTTCTCACAAGGCTTCAAATCCGCCCATGC
TCTGTTCGGTGCTAAATGTCATATAATTTTTCCAGGCGCACAAGGCTCGT
AAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTC
CCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCG
ATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAG
AAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAA
CAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGACACCG
TCAAGGTCAACACTCTCGTCAGGTACGACGACCTATCCCATAATCATTGA
TGTACTACAGAAGTCGGAATATCTAACCTTCCTTTAGGCCCGATGGACTG
AAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGC
TGCCACCAAGCTTGCCATCGTCTAG
back to top

Coding sequence (CDS) from alignment at MCQH01000140:67340..68214-

>ATCC10864_005108-T1 ID=ATCC10864_005108-T1|Name=ATCC10864_005108-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1860bp|location=Sequence derived from alignment at MCQH01000140:67340..68214- (Aspergillus niger ATCC 10864)
GCCCGATGGACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATG
CTCTGGACATCGCTGCCACCAAGCTTGCCATCGTCTAGGCGCACAAGGCT
CGTAAGGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCT
TTCCCGGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCGCC
TCGATGCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATG
AAGAAGATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTC
CAACAAGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGACA
CCGTCAAGGTCAACACTCTCGTCAGGCAAGACCAAGCCCAGCGACAAGGC
TGGTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCATGGCTCCCAAGG
TGGAAAACAAGCAAGGCCCGATGGACTGAAGAAGGCCTTCGCCCGTCTAA
CCCCTGACGTTGATGCTCTGGACATCGCTGCCACCAAGCTTGCCATCGTC
TAGGCGCACAAGGCTCGTAAGGTCCGCACCTCTACGACCTTCCACCGCCC
CAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTACCCCCGCAAGTCGATCC
CCCATGTCCCTCGCCTCGATGCGCACAAGGTCATCCTCTACCCTCTCAAC
ACCGAGAGCGCCATGAAGAAGATCGAGGAGAACAACACCCTGGTCTTCAT
CGTCGACGTCAAGTCCAACAAGCGCCAGATCAAGCTCGCCCTCAAGAAGC
TGTATGACGTTGACACCGTCAAGGTCAACACTCTCGTCAGGCAAGACCAA
GCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAGTCATTAAGGGTGCTG
GCATGGCTCCCAAGGTGGAAAACAAGCAAGGCCCGATGGACTGAAGAAGG
CCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTGGACATCGCTGCCACC
AAGCTTGCCATCGTCTAGGCGCACAAGGCTCGTAAGGTCCGCACCTCTAC
GACCTTCCACCGCCCCAAGACCCTTCAGCTTTCCCGGTCGCCCAAGTACC
CCCGCAAGTCGATCCCCCATGTCCCTCGCCTCGATGCGCACAAGGTCATC
CTCTACCCTCTCAACACCGAGAGCGCCATGAAGAAGATCGAGGAGAACAA
CACCCTGGTCTTCATCGTCGACGTCAAGTCCAACAAGCGCCAGATCAAGC
TCGCCCTCAAGAAGCTGTATGACGTTGACACCGTCAAGGTCAACACTCTC
GTCAGGCAAGACCAAGCCCAGCGACAAGGCTGGTGCTGCCGCCAAGGCAG
TCATTAAGGGTGCTGGCATGGCTCCCAAGGTGGAAAACAAGCAAGGCCCG
ATGGACTGAAGAAGGCCTTCGCCCGTCTAACCCCTGACGTTGATGCTCTG
GACATCGCTGCCACCAAGCTTGCCATCGTCTAGGCGCACAAGGCTCGTAA
GGTCCGCACCTCTACGACCTTCCACCGCCCCAAGACCCTTCAGCTTTCCC
GGTCGCCCAAGTACCCCCGCAAGTCGATCCCCCATGTCCCTCGCCTCGAT
GCGCACAAGGTCATCCTCTACCCTCTCAACACCGAGAGCGCCATGAAGAA
GATCGAGGAGAACAACACCCTGGTCTTCATCGTCGACGTCAAGTCCAACA
AGCGCCAGATCAAGCTCGCCCTCAAGAAGCTGTATGACGTTGACACCGTC
AAGGTCAACACTCTCGTCAGGCAAGACCAAGCCCAGCGACAAGGCTGGTG
CTGCCGCCAAGGCAGTCATTAAGGGTGCTGGCATGGCTCCCAAGGTGGAA
AACAAGCAAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL23AATCC10864_005108Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005108-T1ATCC10864_005108-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005108-T1.cdsATCC10864_005108-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005108-T1.exon4ATCC10864_005108-T1.exon4Aspergillus niger ATCC 10864exon
ATCC10864_005108-T1.exon3ATCC10864_005108-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_005108-T1.exon2ATCC10864_005108-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_005108-T1.exon1ATCC10864_005108-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR012677
PFAMPF00276
InterProIPR012678
PFAMPF03939
InterProIPR005633
InterProIPR013025
Properties
Property NameValue
NoteBUSCO:EOG092657YR
Product60S ribosomal protein L23A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000140supercontigMCQH01000140:67340..68214 -
Powered by Drupal