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Sequences
The following sequences are available for this feature:
mRNA from alignment at MCQH01000164:342253..343584- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC10864_005986-T1 ID=ATCC10864_005986-T1|Name=ATCC10864_005986-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1332bp|location=Sequence derived from alignment at MCQH01000164:342253..343584- (Aspergillus niger ATCC 10864)
ATGTCGGATCCTATCCAGGTTGCCGGGAAGAGAAAGCGTGCCAGTACGTT
CCCCCAATTGCAATTTAAACCCGCGGTTCGCTCTTCAATCCTTTCTCTGC
TTTTCCTGCGTTTCCCTGCTTTCCCTTCCCCCCAAATCTCTCAGCCTTGC
TGTCTCATGTACAGCCGGTGACACCTCGTGCTATTCCCCGCCTGATTTTT
CTTATCGCCAACGCGGGAGATCAACATTCCTTTTTTTTCTCTCTTCTTTC
TTACTTTTTCTTCTTCACGGCTGTCTTTCTTTGTCTCTCGCGATCCCATC
ATCATCCGTTGATGGGTTAATTCCCTGCATCGCTATTCTTTCTACGTTGT
TTGTTAAAATCACAATCACCGTCTTTTTCTATTCTTGTCTCTGTGACACG
CCCTGTCTGTCGCATCACCCAGTGTCCAGCTCCATCTTAGCCTCATCATC
CTCAACCAACCGCGTGGATCTGTCTTTTTTCTGTTATCGCCATTAGAAAT
GGTTGCTGACTCGGTTGAACCTGCAGGGACGCAATCCTGCCCTCCCCCCG
AATTGCCCCAGCTCGTTGCGGAACAGCACACTCCCATCCCTGCTCATGAC
AAAGAGACCCAGCGTCTGATTGTCGTTCTCTCCCATGCCAGCTTGGAAAC
CTATCGGGCTTCCAGCGGACGCAATGGTTCCGGTCGTGATGAGAAGTACT
CCCTGCTCAACAGCGATGAACACATTGGTGTCATGCGCAAGATGAACCGG
GATATCAGCGAGGCTCGCCCGGATATCACACATCAGGTTGGTTGCTCTGT
CTGGGATAGCCAACAACGGCTTGGTGGATGGTTGCTAATGATATATGCTT
GTTAGTGCCTGCTCACCCTGCTCGACTCCCCCGTGAACAAGGCGGGTAAG
CTGCAGATCTTCATCCACACTGCCAAGGGTGTCTTGATCGAGGTGAACCC
TAGCGTGCGCATTCCTCGTACCTTCAAGCGATTCGCTGGTTTGATGGTAC
AGCTGTTGCACCGCCTCTCCATCCGTTCCACCAACTCCCAGGAGAAGCTC
CTGAAGGTCATCAAGAACCCCATCACCGACCACCTTCCCCCCAACTGCCG
CAAGGTGACCCTCAGTTTCGAAGCCCCCGTGGTGCGCACCCGCGACTACA
TCGAATCGCTAGGCCCCAAGGAGAGCGTCTGTATCTTCGTAGGTGCCATG
GCCAAGGGACACGATGACTTTGCCGACTCCTTCAAGGATGACACGATTTC
CATCAGTAACTACAGCTTGAGTGCCAGTGTCGCATGCAGCAAGTTCTGCC
ATGCCGCCGAGGAGGTGTGGGACATTGTCTGA back to topCoding sequence (CDS) from alignment at MCQH01000164:342253..343584- >ATCC10864_005986-T1 ID=ATCC10864_005986-T1|Name=ATCC10864_005986-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2340bp|location=Sequence derived from alignment at MCQH01000164:342253..343584- (Aspergillus niger ATCC 10864)
TGCCTGCTCACCCTGCTCGACTCCCCCGTGAACAAGGCGGGTAAGCTGCA
GATCTTCATCCACACTGCCAAGGGTGTCTTGATCGAGGTGAACCCTAGCG
TGCGCATTCCTCGTACCTTCAAGCGATTCGCTGGTTTGATGGTACAGCTG
TTGCACCGCCTCTCCATCCGTTCCACCAACTCCCAGGAGAAGCTCCTGAA
GGTCATCAAGAACCCCATCACCGACCACCTTCCCCCCAACTGCCGCAAGG
TGACCCTCAGTTTCGAAGCCCCCGTGGTGCGCACCCGCGACTACATCGAA
TCGCTAGGCCCCAAGGAGAGCGTCTGTATCTTCGTAGGTGCCATGGCCAA
GGGACACGATGACTTTGCCGACTCCTTCAAGGATGACACGATTTCCATCA
GTAACTACAGCTTGAGTGCCAGTGTCGCATGCAGCAAGTTCTGCCATGCC
GCCGAGGAGGTGTGGGACATTGTCTGAGGACGCAATCCTGCCCTCCCCCC
GAATTGCCCCAGCTCGTTGCGGAACAGCACACTCCCATCCCTGCTCATGA
CAAAGAGACCCAGCGTCTGATTGTCGTTCTCTCCCATGCCAGCTTGGAAA
CCTATCGGGCTTCCAGCGGACGCAATGGTTCCGGTCGTGATGAGAAGTAC
TCCCTGCTCAACAGCGATGAACACATTGGTGTCATGCGCAAGATGAACCG
GGATATCAGCGAGGCTCGCCCGGATATCACACATCAGATGTCGGATCCTA
TCCAGGTTGCCGGGAAGAGAAAGCGTGCCATGCCTGCTCACCCTGCTCGA
CTCCCCCGTGAACAAGGCGGGTAAGCTGCAGATCTTCATCCACACTGCCA
AGGGTGTCTTGATCGAGGTGAACCCTAGCGTGCGCATTCCTCGTACCTTC
AAGCGATTCGCTGGTTTGATGGTACAGCTGTTGCACCGCCTCTCCATCCG
TTCCACCAACTCCCAGGAGAAGCTCCTGAAGGTCATCAAGAACCCCATCA
CCGACCACCTTCCCCCCAACTGCCGCAAGGTGACCCTCAGTTTCGAAGCC
CCCGTGGTGCGCACCCGCGACTACATCGAATCGCTAGGCCCCAAGGAGAG
CGTCTGTATCTTCGTAGGTGCCATGGCCAAGGGACACGATGACTTTGCCG
ACTCCTTCAAGGATGACACGATTTCCATCAGTAACTACAGCTTGAGTGCC
AGTGTCGCATGCAGCAAGTTCTGCCATGCCGCCGAGGAGGTGTGGGACAT
TGTCTGAGGACGCAATCCTGCCCTCCCCCCGAATTGCCCCAGCTCGTTGC
GGAACAGCACACTCCCATCCCTGCTCATGACAAAGAGACCCAGCGTCTGA
TTGTCGTTCTCTCCCATGCCAGCTTGGAAACCTATCGGGCTTCCAGCGGA
CGCAATGGTTCCGGTCGTGATGAGAAGTACTCCCTGCTCAACAGCGATGA
ACACATTGGTGTCATGCGCAAGATGAACCGGGATATCAGCGAGGCTCGCC
CGGATATCACACATCAGATGTCGGATCCTATCCAGGTTGCCGGGAAGAGA
AAGCGTGCCATGCCTGCTCACCCTGCTCGACTCCCCCGTGAACAAGGCGG
GTAAGCTGCAGATCTTCATCCACACTGCCAAGGGTGTCTTGATCGAGGTG
AACCCTAGCGTGCGCATTCCTCGTACCTTCAAGCGATTCGCTGGTTTGAT
GGTACAGCTGTTGCACCGCCTCTCCATCCGTTCCACCAACTCCCAGGAGA
AGCTCCTGAAGGTCATCAAGAACCCCATCACCGACCACCTTCCCCCCAAC
TGCCGCAAGGTGACCCTCAGTTTCGAAGCCCCCGTGGTGCGCACCCGCGA
CTACATCGAATCGCTAGGCCCCAAGGAGAGCGTCTGTATCTTCGTAGGTG
CCATGGCCAAGGGACACGATGACTTTGCCGACTCCTTCAAGGATGACACG
ATTTCCATCAGTAACTACAGCTTGAGTGCCAGTGTCGCATGCAGCAAGTT
CTGCCATGCCGCCGAGGAGGTGTGGGACATTGTCTGAGGACGCAATCCTG
CCCTCCCCCCGAATTGCCCCAGCTCGTTGCGGAACAGCACACTCCCATCC
CTGCTCATGACAAAGAGACCCAGCGTCTGATTGTCGTTCTCTCCCATGCC
AGCTTGGAAACCTATCGGGCTTCCAGCGGACGCAATGGTTCCGGTCGTGA
TGAGAAGTACTCCCTGCTCAACAGCGATGAACACATTGGTGTCATGCGCA
AGATGAACCGGGATATCAGCGAGGCTCGCCCGGATATCACACATCAGATG
TCGGATCCTATCCAGGTTGCCGGGAAGAGAAAGCGTGCCA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0070037 | rRNA (pseudouridine) methyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0070475 | rRNA base methylation |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Cross References
External references for this mRNA
| Database | Accession |
|---|
| PFAM | PF03587 |
| InterPro | IPR029026 |
| InterPro | IPR005304 |
| InterPro | IPR029028 |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263DFA |
| Product | 18S rRNA pseudouridine methyltransferase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| MCQH01000164 | supercontig | MCQH01000164:342253..343584 - |
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