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ATCC10864_006963-T1, ATCC10864_006963-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_006963-T1
Unique NameATCC10864_006963-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000170:338775..339392+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_006963-T1 ID=ATCC10864_006963-T1|Name=ATCC10864_006963-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=618bp|location=Sequence derived from alignment at MCQH01000170:338775..339392+ (Aspergillus niger ATCC 10864)
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCCTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTGTACGTTTTGACT
TGCTCTGAAATGGCTAATGTGTATCTAACACACTTGTGCGCAGTTGACTT
CGAGTCGTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTG
GCGAGCCCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTG
ACTGGGTTTATCGGTGTGGGACAGCTCCGATACAGTATGTGAAGCAGGAT
GGAGTTTATTGGGTTGATACTGATGATGGCTACAGTCCTGACGAATCTCG
GTGAGAAGATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGAC
ACCAGCTCCGGCGAGATCAACTACACCGGTATGTTACACCAACTGAAAGT
TCACCATGCCTTTGTGTTGGGTCAGGCTAACAGCAGCAGACCTCGTCCGC
ACCATCCTGGCCAACTAA
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Coding sequence (CDS) from alignment at MCQH01000170:338775..339392+

>ATCC10864_006963-T1 ID=ATCC10864_006963-T1|Name=ATCC10864_006963-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1800bp|location=Sequence derived from alignment at MCQH01000170:338775..339392+ (Aspergillus niger ATCC 10864)
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCCTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTC
GTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGC
CCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGG
TTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAA
GATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGCT
CCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAA
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCCTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTC
GTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGC
CCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGG
TTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAA
GATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGCT
CCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAA
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCCTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTC
GTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGC
CCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGG
TTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAA
GATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGCT
CCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAA
ATGTCTCGCTCACCAGATATGCACCATGACCAGGCCTCGACCAACTACAA
GGAAGCCTTCTCTCTCTTCGATAAGCGTGGTACCGGCAAGGTCGCGCTCG
AGTCGCTAGGCGACCTCCTGCGCGCATGCGGTCAGAATCCTACTTTGGCG
GAGATCGCAGATTTGGAGAAGTCCATCGGTGGAGACTTTGACTTCGAGTC
GTTCTTGAAGGTCCTCAACCGCCCTGGAGGCTTCCGTGACCCTGGCGAGC
CCGAAGAATACTGCCGCGGATTCCAGGTGTTCGACAAGGACCTGACTGGG
TTTATCGGTGTGGGACAGCTCCGATACATCCTGACGAATCTCGGTGAGAA
GATGTCGGATGAGGAGGTTGACGAGCTACTCAAGGCCGTCGACACCAGCT
CCGGCGAGATCAACTACACCGACCTCGTCCGCACCATCCTGGCCAACTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CDC4ATCC10864_006963Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_006963-T1.exon1ATCC10864_006963-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_006963-T1.exon2ATCC10864_006963-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_006963-T1.exon3ATCC10864_006963-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_006963-T1.exon4ATCC10864_006963-T1.exon4Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_006963-T1.cdsATCC10864_006963-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_006963-T1ATCC10864_006963-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF13499
InterProIPR011992
PFAMPF13833
InterProIPR002048
Properties
Property NameValue
NoteBUSCO:EOG09265591
ProductSCF ubiquitin ligase complex subunit cdc4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000170supercontigMCQH01000170:338775..339392 +
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