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ATCC10864_007409-T1, ATCC10864_007409-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_007409-T1
Unique NameATCC10864_007409-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000184:286052..287116-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_007409-T1 ID=ATCC10864_007409-T1|Name=ATCC10864_007409-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1065bp|location=Sequence derived from alignment at MCQH01000184:286052..287116- (Aspergillus niger ATCC 10864)
ATGGGCGACCGCACTGTGGGATTGGAAACGGGTCTTTGCAAGATGCTTCG
GACGGTCTTTCTCTGAAGCGCAAATTGCTGACTCGACTCTGTCTTGTAGC
CTTTCCACAAGCTCGTCAAGAACAGCGCTTACTACAGGTAAGAAATTCAC
AAGACACCTCATTTGGCAAAATTTGGCATAAACTAATAAAATTCCTTCTA
TAGCCGCTACCAGACCAAGTACCGTCGTCGCCGTGAGGGTAAGACCGACT
ACTATGCCCGTAAGCGCTTGATCACCCAGGCCAAGAACAAGTACAACGCC
CCCAAGTACCGCCTGGTCGTCCGCTTCACCAACCGCGACATCATCACCCA
GATCGTCTACTCTGAGATCTCCGGTGACAAGGTCTTCGCCAGCGCCTACT
CCCACGAGCTCAAGCGCTATGGCATCACCAACGGTCTGACCAACTGGGCT
GCCGCCTACGCCACCGGTCTCCTCCTTGCCCGCCGTACCCTCAAGAAGCT
CGGCCTGGATGAGCAGTTCCCCGGTGTTGAGGAGGCCGATGGTGAGTACA
CCCTCACCGAGGCTGCTGAGACCGACGAGGGCTCCCGCCGCCCCTTCAAG
GCTTTCCTTGATGTTGGTCTTGCTCGTACCTCCACTGGTGCCCGTGTCTT
CGGTGCCATGAAGGGTGCCTCCGACGGTGGTATCTTCGTCCCCCACTCCG
AGAGCCGCTTCCCCGGTTTCGACATCGAGTCCGAGGAGCTCGACGCTGAG
ACTCTCCGCAACTACATCTTCGGTGGCCACGTCGCTGAGTACATGGAGGG
TCTTGCCGACGACGATGAGGAGCGTTTCACCTCCCAGTTCCACAAGTACC
AGGAGGCTGGTATTGAGGCTGGTGACATTGAGGAGCTCTACACTGAGGCC
CACAAGGCCATCCGTGAGGACCCCTTCAAGAAGGACGAGGATGCTGGTGA
GAAGAAGACCAAGGAGGAGTGGAAGGCCGAGAGCAAGAAGTTCCGCCAGC
AGCGCCTCACCCGCGAGCAGCGCAAGGAGCGTGTTGAGCAGAAGATCCGT
GAGCTTGCTGCTTAA
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Coding sequence (CDS) from alignment at MCQH01000184:286052..287116-

>ATCC10864_007409-T1 ID=ATCC10864_007409-T1|Name=ATCC10864_007409-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2862bp|location=Sequence derived from alignment at MCQH01000184:286052..287116- (Aspergillus niger ATCC 10864)
CCGCTACCAGACCAAGTACCGTCGTCGCCGTGAGGGTAAGACCGACTACT
ATGCCCGTAAGCGCTTGATCACCCAGGCCAAGAACAAGTACAACGCCCCC
AAGTACCGCCTGGTCGTCCGCTTCACCAACCGCGACATCATCACCCAGAT
CGTCTACTCTGAGATCTCCGGTGACAAGGTCTTCGCCAGCGCCTACTCCC
ACGAGCTCAAGCGCTATGGCATCACCAACGGTCTGACCAACTGGGCTGCC
GCCTACGCCACCGGTCTCCTCCTTGCCCGCCGTACCCTCAAGAAGCTCGG
CCTGGATGAGCAGTTCCCCGGTGTTGAGGAGGCCGATGGTGAGTACACCC
TCACCGAGGCTGCTGAGACCGACGAGGGCTCCCGCCGCCCCTTCAAGGCT
TTCCTTGATGTTGGTCTTGCTCGTACCTCCACTGGTGCCCGTGTCTTCGG
TGCCATGAAGGGTGCCTCCGACGGTGGTATCTTCGTCCCCCACTCCGAGA
GCCGCTTCCCCGGTTTCGACATCGAGTCCGAGGAGCTCGACGCTGAGACT
CTCCGCAACTACATCTTCGGTGGCCACGTCGCTGAGTACATGGAGGGTCT
TGCCGACGACGATGAGGAGCGTTTCACCTCCCAGTTCCACAAGTACCAGG
AGGCTGGTATTGAGGCTGGTGACATTGAGGAGCTCTACACTGAGGCCCAC
AAGGCCATCCGTGAGGACCCCTTCAAGAAGGACGAGGATGCTGGTGAGAA
GAAGACCAAGGAGGAGTGGAAGGCCGAGAGCAAGAAGTTCCGCCAGCAGC
GCCTCACCCGCGAGCAGCGCAAGGAGCGTGTTGAGCAGAAGATCCGTGAG
CTTGCTGCTTAACCTTTCCACAAGCTCGTCAAGAACAGCGCTTACTACAG
ATGGGCGACCGCACTGTGGGATTGGAAACGGGTCTTTGCAAGATGCTTCG
GACGCCGCTACCAGACCAAGTACCGTCGTCGCCGTGAGGGTAAGACCGAC
TACTATGCCCGTAAGCGCTTGATCACCCAGGCCAAGAACAAGTACAACGC
CCCCAAGTACCGCCTGGTCGTCCGCTTCACCAACCGCGACATCATCACCC
AGATCGTCTACTCTGAGATCTCCGGTGACAAGGTCTTCGCCAGCGCCTAC
TCCCACGAGCTCAAGCGCTATGGCATCACCAACGGTCTGACCAACTGGGC
TGCCGCCTACGCCACCGGTCTCCTCCTTGCCCGCCGTACCCTCAAGAAGC
TCGGCCTGGATGAGCAGTTCCCCGGTGTTGAGGAGGCCGATGGTGAGTAC
ACCCTCACCGAGGCTGCTGAGACCGACGAGGGCTCCCGCCGCCCCTTCAA
GGCTTTCCTTGATGTTGGTCTTGCTCGTACCTCCACTGGTGCCCGTGTCT
TCGGTGCCATGAAGGGTGCCTCCGACGGTGGTATCTTCGTCCCCCACTCC
GAGAGCCGCTTCCCCGGTTTCGACATCGAGTCCGAGGAGCTCGACGCTGA
GACTCTCCGCAACTACATCTTCGGTGGCCACGTCGCTGAGTACATGGAGG
GTCTTGCCGACGACGATGAGGAGCGTTTCACCTCCCAGTTCCACAAGTAC
CAGGAGGCTGGTATTGAGGCTGGTGACATTGAGGAGCTCTACACTGAGGC
CCACAAGGCCATCCGTGAGGACCCCTTCAAGAAGGACGAGGATGCTGGTG
AGAAGAAGACCAAGGAGGAGTGGAAGGCCGAGAGCAAGAAGTTCCGCCAG
CAGCGCCTCACCCGCGAGCAGCGCAAGGAGCGTGTTGAGCAGAAGATCCG
TGAGCTTGCTGCTTAACCTTTCCACAAGCTCGTCAAGAACAGCGCTTACT
ACAGATGGGCGACCGCACTGTGGGATTGGAAACGGGTCTTTGCAAGATGC
TTCGGACGCCGCTACCAGACCAAGTACCGTCGTCGCCGTGAGGGTAAGAC
CGACTACTATGCCCGTAAGCGCTTGATCACCCAGGCCAAGAACAAGTACA
ACGCCCCCAAGTACCGCCTGGTCGTCCGCTTCACCAACCGCGACATCATC
ACCCAGATCGTCTACTCTGAGATCTCCGGTGACAAGGTCTTCGCCAGCGC
CTACTCCCACGAGCTCAAGCGCTATGGCATCACCAACGGTCTGACCAACT
GGGCTGCCGCCTACGCCACCGGTCTCCTCCTTGCCCGCCGTACCCTCAAG
AAGCTCGGCCTGGATGAGCAGTTCCCCGGTGTTGAGGAGGCCGATGGTGA
GTACACCCTCACCGAGGCTGCTGAGACCGACGAGGGCTCCCGCCGCCCCT
TCAAGGCTTTCCTTGATGTTGGTCTTGCTCGTACCTCCACTGGTGCCCGT
GTCTTCGGTGCCATGAAGGGTGCCTCCGACGGTGGTATCTTCGTCCCCCA
CTCCGAGAGCCGCTTCCCCGGTTTCGACATCGAGTCCGAGGAGCTCGACG
CTGAGACTCTCCGCAACTACATCTTCGGTGGCCACGTCGCTGAGTACATG
GAGGGTCTTGCCGACGACGATGAGGAGCGTTTCACCTCCCAGTTCCACAA
GTACCAGGAGGCTGGTATTGAGGCTGGTGACATTGAGGAGCTCTACACTG
AGGCCCACAAGGCCATCCGTGAGGACCCCTTCAAGAAGGACGAGGATGCT
GGTGAGAAGAAGACCAAGGAGGAGTGGAAGGCCGAGAGCAAGAAGTTCCG
CCAGCAGCGCCTCACCCGCGAGCAGCGCAAGGAGCGTGTTGAGCAGAAGA
TCCGTGAGCTTGCTGCTTAACCTTTCCACAAGCTCGTCAAGAACAGCGCT
TACTACAGATGGGCGACCGCACTGTGGGATTGGAAACGGGTCTTTGCAAG
ATGCTTCGGACG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:00080975S rRNA binding
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL5ATCC10864_007409Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007409-T1ATCC10864_007409-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007409-T1.cdsATCC10864_007409-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007409-T1.exon3ATCC10864_007409-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_007409-T1.exon2ATCC10864_007409-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_007409-T1.exon1ATCC10864_007409-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF14204
InterProIPR005485
PFAMPF17144
InterProIPR025607
Properties
Property NameValue
NoteBUSCO:EOG0926419M
Product60S ribosomal protein L5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000184supercontigMCQH01000184:286052..287116 -
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