You are here

Home

ATCC10864_007519-T1, ATCC10864_007519-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_007519-T1
Unique NameATCC10864_007519-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000184:585849..587348+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_007519-T1 ID=ATCC10864_007519-T1|Name=ATCC10864_007519-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1500bp|location=Sequence derived from alignment at MCQH01000184:585849..587348+ (Aspergillus niger ATCC 10864)
ATGTTCTCCCGCCGAAACCTCGTCGCCCTAGGGCTGGCAGCCACCGTCAG
CGCCGGCCCCTGTGACATCTACGAAGCCGGCGACACGCCCTGCGTAGCCG
CGCACAGCACCACCCGCGCCCTATACAGCTCCTTCAGCGGCGCCCTCTAC
CAGCTCCAACGTGGCTCCGACGACACCACCACCACCATCTCCCCGCTCAC
AGCCGGCGGCGTCGCCGACGCCTCCGCCCAAGACACCTTCTGTGCCAACA
CCACCTGCTTGATCACCATCATCTACGACCAATCCGGCAACGGCAACCAC
CTGACCCAAGCACCCCCGGGAGGCTTCGACGGCCCCGACGTCGACGGCTA
CGACAACCTCGCCAGCGCCATCGGCGCCCCCGTCACCCTCAATGGCCAAA
AGGCCTACGGCGTGTTCATGTCCCCCGGCACGGGCTACCGTAACAACGAA
GCCACCGGCACCGCCACCGGCGACGAACCCGAAGGCATGTACGCCGTCCT
GGACGGCACGCACTACAACGACGCCTGCTGCTTCGACTACGGCAACGCCG
AGACCAGCAGCACCGACACTGGCGCCGGCCACATGGAGGCCATCTACCTC
GGGAACAGCACCACCTGGGGCTACGGCGCCGGTGACGGGCCCTGGATCAT
GGTCGATATGGAGAACAACCTCTTCTCCGGTGCTGATGAGGGATATAACT
CCGGAGATCCCTCGATCAGCTACAGCTTTGTCACTGCCGCGGTCAAGGGC
GGGGCTGATAAGTGGGCTATTCGCGGTGGTAATGCTGCCTCTGGGTCCCT
CTCTACTTACTACAGCGGCGCTCGCCCGGATTACTCCGGCTATAACCCCA
TGAGCAAGGAGGGCGCTATCATCCTGGGTATCGGCGGTGACAACAGCAAC
GGCGCCCAGGGTACCTTCTACGAGGGTGTCATGACCTCCGGCTACCCGTC
GGACGATGTCGAGAACTCCGTCCAGGAGAACATCGTGGCTGCGAAATACG
TCTCCGGCTCGCTGGTCAGCGGCCCGTCGTTCACCTCCGGAGAGGTGGTC
TCGCTGCGTGTCACTACGCCCGGTTACACGACGCGGTATATTGCGCACAC
TGACACCACTGTGAACACGCAGGTCGTGGACGACGATAGTTCCACCACGC
TGAAGGAGGAGGCTAGCTGGACCGTGGTGACCGGTCTGGCTAATAGTCAG
TGCTTCTCGTTCGAGTCGGTTGATACCCCTGGTAGCTATATCCGGCATTA
CAACTTTGAGTTGCTGCTTAATGCCAATGATGGCACGAAGCAGTTCCATG
AGGATGCTACTTTCTGTCCTCAGGCGCCGTTGAATGGAGAGGGTACTTCG
TTGAGATCGTGGAGTTATCCGACGAGGTATTTCAGACATTATGATAATGT
CCTGTATGCTGCTAGTAATGGCGGTGTGCAGACGTTTGATTCCAAGACAT
CGTTCAATAATGATGTTAGCTTTGAGATTGAGACGGCGTTTGCTTCGTAA
back to top

Coding sequence (CDS) from alignment at MCQH01000184:585849..587348+

>ATCC10864_007519-T1 ID=ATCC10864_007519-T1|Name=ATCC10864_007519-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1500bp|location=Sequence derived from alignment at MCQH01000184:585849..587348+ (Aspergillus niger ATCC 10864)
ATGTTCTCCCGCCGAAACCTCGTCGCCCTAGGGCTGGCAGCCACCGTCAG
CGCCGGCCCCTGTGACATCTACGAAGCCGGCGACACGCCCTGCGTAGCCG
CGCACAGCACCACCCGCGCCCTATACAGCTCCTTCAGCGGCGCCCTCTAC
CAGCTCCAACGTGGCTCCGACGACACCACCACCACCATCTCCCCGCTCAC
AGCCGGCGGCGTCGCCGACGCCTCCGCCCAAGACACCTTCTGTGCCAACA
CCACCTGCTTGATCACCATCATCTACGACCAATCCGGCAACGGCAACCAC
CTGACCCAAGCACCCCCGGGAGGCTTCGACGGCCCCGACGTCGACGGCTA
CGACAACCTCGCCAGCGCCATCGGCGCCCCCGTCACCCTCAATGGCCAAA
AGGCCTACGGCGTGTTCATGTCCCCCGGCACGGGCTACCGTAACAACGAA
GCCACCGGCACCGCCACCGGCGACGAACCCGAAGGCATGTACGCCGTCCT
GGACGGCACGCACTACAACGACGCCTGCTGCTTCGACTACGGCAACGCCG
AGACCAGCAGCACCGACACTGGCGCCGGCCACATGGAGGCCATCTACCTC
GGGAACAGCACCACCTGGGGCTACGGCGCCGGTGACGGGCCCTGGATCAT
GGTCGATATGGAGAACAACCTCTTCTCCGGTGCTGATGAGGGATATAACT
CCGGAGATCCCTCGATCAGCTACAGCTTTGTCACTGCCGCGGTCAAGGGC
GGGGCTGATAAGTGGGCTATTCGCGGTGGTAATGCTGCCTCTGGGTCCCT
CTCTACTTACTACAGCGGCGCTCGCCCGGATTACTCCGGCTATAACCCCA
TGAGCAAGGAGGGCGCTATCATCCTGGGTATCGGCGGTGACAACAGCAAC
GGCGCCCAGGGTACCTTCTACGAGGGTGTCATGACCTCCGGCTACCCGTC
GGACGATGTCGAGAACTCCGTCCAGGAGAACATCGTGGCTGCGAAATACG
TCTCCGGCTCGCTGGTCAGCGGCCCGTCGTTCACCTCCGGAGAGGTGGTC
TCGCTGCGTGTCACTACGCCCGGTTACACGACGCGGTATATTGCGCACAC
TGACACCACTGTGAACACGCAGGTCGTGGACGACGATAGTTCCACCACGC
TGAAGGAGGAGGCTAGCTGGACCGTGGTGACCGGTCTGGCTAATAGTCAG
TGCTTCTCGTTCGAGTCGGTTGATACCCCTGGTAGCTATATCCGGCATTA
CAACTTTGAGTTGCTGCTTAATGCCAATGATGGCACGAAGCAGTTCCATG
AGGATGCTACTTTCTGTCCTCAGGCGCCGTTGAATGGAGAGGGTACTTCG
TTGAGATCGTGGAGTTATCCGACGAGGTATTTCAGACATTATGATAATGT
CCTGTATGCTGCTAGTAATGGCGGTGTGCAGACGTTTGATTCCAAGACAT
CGTTCAATAATGATGTTAGCTTTGAGATTGAGACGGCGTTTGCTTCGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046556alpha-L-arabinofuranosidase activity
Vocabulary: Biological Process
TermDefinition
GO:0046373L-arabinose metabolic process
GO:0031221arabinan metabolic process
GO:0019566arabinose metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC10864_007519ATCC10864_007519Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007519-T1.exon1ATCC10864_007519-T1.exon1Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007519-T1.cdsATCC10864_007519-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007519-T1ATCC10864_007519-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR038964
InterProIPR015289
InterProIPR036195
InterProIPR013320
InterProIPR007934
PFAMPF05270
PFAMPF09206
Properties
Property NameValue
NoteCAZy:CBM42
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH54
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000184supercontigMCQH01000184:585849..587348 +
Powered by Drupal