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Sequences
The following sequences are available for this feature:
mRNA from alignment at MCQH01000184:1245414..1246554- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC10864_007755-T1 ID=ATCC10864_007755-T1|Name=ATCC10864_007755-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1141bp|location=Sequence derived from alignment at MCQH01000184:1245414..1246554- (Aspergillus niger ATCC 10864) ATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCAC
CTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCA
CCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTT
AACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCAC
CAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAG
AATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACT
GGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGG
CAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCC
TTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACTCCCCTTATG
GCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAA
TAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATG
TTGGTAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAG
GATGACTGTCTTGCGATTAACTCTGGCGAGGTAAGCAGCTCTACATATAT
GCTTGATTCGGAATTATATTGATATTCTGTAGAACATCTGGTTCACCGGC
GGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCGGCGACCG
CTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACCGTGAGCA
ATTCCGAAAACGCCGTCCGAATCAAGACCATCTCTGGCGCCACTGGCTCC
GTGTCTGAGATTACATACTCCAACATCGTCATGTCCGGCATCTCCGATTA
CGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACGGGTAAGC
CGACGAACGGTGTCACTATTCAGGATGTCAAGCTGGAGAGCGTGACCGGT
AGCGTGGATAGTAAGGCTACTGAGATCTATCTTCTTTGCGGGTCTGGTAG
CTGCTCGGACTGGACCTGGGACGATGTGAAGGTTACTGGGGGGAAGAAGT
CCACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGCTAG back to topCoding sequence (CDS) from alignment at MCQH01000184:1245414..1246554- >ATCC10864_007755-T1 ID=ATCC10864_007755-T1|Name=ATCC10864_007755-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2178bp|location=Sequence derived from alignment at MCQH01000184:1245414..1246554- (Aspergillus niger ATCC 10864) AACATCTGGTTCACCGGCGGCACCTGCATTGGCGGCCACGGTCTCTCCAT CGGCTCTGTCGGCGACCGCTCCAACAACGTCGTCAAGAACGTCACCATCG AACACTCCACCGTGAGCAATTCCGAAAACGCCGTCCGAATCAAGACCATC TCTGGCGCCACTGGCTCCGTGTCTGAGATTACATACTCCAACATCGTCAT GTCCGGCATCTCCGATTACGGCGTGGTCATTCAGCAGGATTACGAAGACG GCAAGCCTACGGGTAAGCCGACGAACGGTGTCACTATTCAGGATGTCAAG CTGGAGAGCGTGACCGGTAGCGTGGATAGTAAGGCTACTGAGATCTATCT TCTTTGCGGGTCTGGTAGCTGCTCGGACTGGACCTGGGACGATGTGAAGG TTACTGGGGGGAAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTGGCC TCTTGCTAGATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGC CGGCGCCACCTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCA CGTTCACCACCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACT ATCACCCTTAACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGAC CGGTCTCACCAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCC AGTACGAAGAATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATC ACCGTCACTGGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTG GTGGGATGGCAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACG CCCATGGCCTTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACT CCCCTTATGGCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGT TACCATCAATAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATG CGTTCGATGTTGGTAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTC CATAACCAGGATGACTGTCTTGCGATTAACTCTGGCGAGAACATCTGGTT CACCGGCGGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCG GCGACCGCTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACC GTGAGCAATTCCGAAAACGCCGTCCGAATCAAGACCATCTCTGGCGCCAC TGGCTCCGTGTCTGAGATTACATACTCCAACATCGTCATGTCCGGCATCT CCGATTACGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACG GGTAAGCCGACGAACGGTGTCACTATTCAGGATGTCAAGCTGGAGAGCGT GACCGGTAGCGTGGATAGTAAGGCTACTGAGATCTATCTTCTTTGCGGGT CTGGTAGCTGCTCGGACTGGACCTGGGACGATGTGAAGGTTACTGGGGGG AAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGCTAGAT GCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCACCT TCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCACC GCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTTAA CAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCACCA GCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAGAA TGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACTGG TGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGGCA AGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCCTT GACTCCTCGTCTATTACTGGATTAAACATCAAAAACACTCCCCTTATGGC GTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAATA ATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATGTT GGTAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAGGA TGACTGTCTTGCGATTAACTCTGGCGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
Term | Definition |
GO:0004650 | polygalacturonase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0005975 | carbohydrate metabolic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Cross References
External references for this mRNA
Database | Accession |
InterPro | IPR000743 |
InterPro | IPR006626 |
InterPro | IPR012334 |
InterPro | IPR011050 |
PFAM | PF00295 |
Properties
Property Name | Value |
Note | CAZy:GH28 |
Note | SECRETED:SignalP(1-21) |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
MCQH01000184 | supercontig | MCQH01000184:1245414..1246554 - |
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